Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E01
         (1176 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical ...    59   7e-09
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    32   0.90 
Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    32   0.90 
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    31   1.2  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    31   1.2  
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    31   2.1  
AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    31   2.1  

>AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical
           protein E01A2.6 protein.
          Length = 218

 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 30/75 (40%), Positives = 46/75 (61%)
 Frame = +3

Query: 603 RARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQVQRRPP 782
           R+  +  FT   V+MICER+L  QE+ LR E+E VL+ KL EQ++ +V+F  +Q+     
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEIRLRNEFEMVLTKKLDEQHQQYVQFAAEQLN---- 202

Query: 783 PSTCMSLGMDAEHMH 827
            S C+S G D  + +
Sbjct: 203 -SKCVSTGDDYSYSY 216


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 832 SWCMCSASIPSDMHVLGGGRRCT*SRLNLTKASYCSAS 719
           +W    A  P  +H +GG +R      N+T A YCS S
Sbjct: 436 NWSSAGAGTPRQLHPIGGNQRVN----NITSAQYCSPS 469


>Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
           protein T21H8.1a protein.
          Length = 920

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 832 SWCMCSASIPSDMHVLGGGRRCT*SRLNLTKASYCSAS 719
           +W    A  P  +H +GG +R      N+T A YCS S
Sbjct: 436 NWSSAGAGTPRQLHPIGGNQRVN----NITSAQYCSPS 469


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 454 AWHKXFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 621
           A+ K F   + DC+  D    PTA  LL ++  +   D K  VH LI  L   +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411

Query: 622 YS 627
           +S
Sbjct: 412 HS 413


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 454 AWHKXFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 621
           A+ K F   + DC+  D    PTA  LL ++  +   D K  VH LI  L   +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411

Query: 622 YS 627
           +S
Sbjct: 412 HS 413


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +1

Query: 685 YVLSMSLYSAPSLLNSMKPL*GSTWIRCSADPRPARACRSVWTP-NTCTRTSYPAICPN- 858
           ++L   L+SAP+       L G +   CS  P P+  C +   P  TCT  S PA C   
Sbjct: 5   FLLLFLLFSAPASA-FFNSLFGGSNCGCSCTPPPS-TCPTTCLPIMTCTPPSPPACCNTC 62

Query: 859 ---NNMRRKRGVT 888
              N  RR+R +T
Sbjct: 63  GTCNGKRRRRHLT 75


>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 572 TASSISSWPTTCPHSCTIHF*TGSYDL*AN 661
           T+SSI +WPTTC   C   + T   DL  N
Sbjct: 38  TSSSIKNWPTTCESVCGNLYLTSETDLSEN 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,911,731
Number of Sequences: 27780
Number of extensions: 414159
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3213813064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)