Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D24
         (1198 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    61   2e-09
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    31   1.4  
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    31   1.8  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 37/87 (42%), Positives = 47/87 (54%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K +  L  QL  LK   + LRVA+V GG  + LSK++VV  ++ARV  V  Q     L
Sbjct: 10  RGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTVISQKQRAAL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALT 367
              YK K   PL L  K  RA+R+ LT
Sbjct: 70  REAYKKKSLLPLDLRPKKTRAIRRRLT 96


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 59  ASPVPVXXGXVPCXAFRPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKA 238
           A  V V    +     R + +  L  QL  LK   + LRVA+V GG  + LS ++ V  A
Sbjct: 101 AVTVTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTA 159

Query: 239 LARVY 253
           L   Y
Sbjct: 160 LREAY 164


>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
            5988427-5989228,5990966-5991016,5992391-5993464,
            5994458-5994706
          Length = 1666

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 71   PVXXGXVPCXAFRPKXQKALFKQLAALKPAFTN 169
            P+  G +PC  FRP   + + + L AL+P+F N
Sbjct: 1208 PLVGGSLPCPQFRPFIMEHVAQGLNALEPSFMN 1240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,298,909
Number of Sequences: 37544
Number of extensions: 105850
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)