Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D24
         (1198 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12465-1|AAA51648.1|  123|Homo sapiens ribosomal protein L35 pro...    91   7e-18
CR456877-1|CAG33158.1|  123|Homo sapiens RPL35 protein.                91   7e-18
BC094828-1|AAH94828.1|  123|Homo sapiens ribosomal protein L35 p...    91   7e-18
BC071915-1|AAH71915.1|  123|Homo sapiens ribosomal protein L35 p...    91   7e-18
BC000348-1|AAH00348.1|  123|Homo sapiens ribosomal protein L35 p...    91   7e-18
AL354928-8|CAI39639.1|  123|Homo sapiens ribosomal protein L35 p...    91   7e-18
BC010919-1|AAH10919.1|  123|Homo sapiens RPL35 protein protein.        90   2e-17
AL354928-7|CAI39638.1|   95|Homo sapiens ribosomal protein L35 p...    60   2e-08
AB046409-1|BAB21255.1|   33|Homo sapiens ribosomal protein L35 p...    42   0.003

>U12465-1|AAA51648.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 91.1 bits (216), Expect = 7e-18
 Identities = 53/114 (46%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAVKA
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123


>CR456877-1|CAG33158.1|  123|Homo sapiens RPL35 protein.
          Length = 123

 Score = 91.1 bits (216), Expect = 7e-18
 Identities = 53/114 (46%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAVKA
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123


>BC094828-1|AAH94828.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 91.1 bits (216), Expect = 7e-18
 Identities = 53/114 (46%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAVKA
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123


>BC071915-1|AAH71915.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 91.1 bits (216), Expect = 7e-18
 Identities = 53/114 (46%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAVKA
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123


>BC000348-1|AAH00348.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 91.1 bits (216), Expect = 7e-18
 Identities = 53/114 (46%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAVKA
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123


>AL354928-8|CAI39639.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 91.1 bits (216), Expect = 7e-18
 Identities = 53/114 (46%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAVKA
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123


>BC010919-1|AAH10919.1|  123|Homo sapiens RPL35 protein protein.
          Length = 123

 Score = 89.8 bits (213), Expect = 2e-17
 Identities = 52/114 (45%), Positives = 64/114 (56%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 10  RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69

Query: 287 XNHYKNKQYKPLALSAKXPRAMRKALTXXXXXXXXXXXXXXXSLFPPRVYAVKA 448
              YK K+YKPL L  K  RAMR+ L                 L+P R YAV+A
Sbjct: 70  RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVRA 123


>AL354928-7|CAI39638.1|   95|Homo sapiens ribosomal protein L35
           protein.
          Length = 95

 Score = 59.7 bits (138), Expect = 2e-08
 Identities = 33/65 (50%), Positives = 41/65 (63%)
 Frame = +2

Query: 107 RPKXQKALFKQLAALKPAFTNLRVAQVXGGVASXLSKLRVVSKALARVYIVXHQXLXVNL 286
           R K ++ L KQL  LK   + LRVA+V GG AS LSK+RVV K++ARV  V +Q    NL
Sbjct: 9   RGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 68

Query: 287 XNHYK 301
              YK
Sbjct: 69  RKFYK 73


>AB046409-1|BAB21255.1|   33|Homo sapiens ribosomal protein L35
           protein.
          Length = 33

 Score = 42.3 bits (95), Expect = 0.003
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +2

Query: 170 LRVAQVXGGVASXLSKLRVVSKALARVYIVXHQ 268
           LRVA+V GG AS LSK+RVV K++ARV  V +Q
Sbjct: 1   LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,100,974
Number of Sequences: 237096
Number of extensions: 527093
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16844146380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)