Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D22
         (1162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    35   0.019
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.8  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    26   8.7  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    26   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.7  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 35.1 bits (77), Expect = 0.019
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 843 PSIAKAITNFVLYKFNSLPQREWQTMYDXAKMFLHCFNHXNFETPSVRKLXS 998
           P I  AIT F L  + S+P   W T YD +K+  + F+  + +  S+ K  S
Sbjct: 493 PVIFGAITIFGLISWLSIPASRWSTFYDASKLDSNSFDDSSSDKKSLEKAAS 544


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -1

Query: 697 STSTTAPSSLFTSATGKPCS*LTCFSNTWLQFLHTSLKLARG*LSARGVLPACCVTGVFH 518
           +TS    SS FT+ TG P      + NT   FL +S+ ++   LS+  VLP   +T    
Sbjct: 204 NTSMIPSSSSFTTTTGSP------YYNT-SSFLPSSV-ISSASLSSSSVLPTSIITSTST 255

Query: 517 PLQLQS 500
           P+ + S
Sbjct: 256 PVTVSS 261


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 450 HNKKLLKLAIYSACQTPDCNCNGWKTPVTQHAG 548
           ++K   K + +  CQTP+  C     PVT+  G
Sbjct: 33  YHKLRAKQSFFEMCQTPETACELTLQPVTRFKG 65


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 25/100 (25%), Positives = 41/100 (41%)
 Frame = +1

Query: 706  LCRCKEKMTTTLNKFTTIYLRYFVNAS*RVPSLGSRDHWDNLHSKGLP*LKQ*QTSFSTS 885
            LC C   + ++ N FTT    Y V  S     +   D++     KGL  +    +S S+S
Sbjct: 393  LCMCPWNLLSSNNNFTTYLSSYSVFLS-SFAGVIIADYY--FVRKGLIRVAPLYSSSSSS 449

Query: 886  SIHYHKGNGKQCTIXPRCSFTVSIXGILKRPASGSXKVSN 1005
              ++ KG   +      C   ++I G+         KV+N
Sbjct: 450  PYYFWKGINFRAFASYICGMLINIVGMAGSTGQKVPKVAN 489


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 747 VYYYLFKILRKCILTRSQPRIEGPLGQPPFERPSIAKAITN 869
           VY+   KI  K +    Q R   PL    F +P+I K ITN
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,677,395
Number of Sequences: 5004
Number of extensions: 71407
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)