Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D22
         (1162 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039...    30   3.0  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    29   7.0  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    29   9.3  
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967...    29   9.3  

>01_06_1579 +
           38402868-38402894,38403394-38403582,38403817-38403918,
           38404005-38405963,38406050-38406105,38406332-38406368
          Length = 789

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 564 DNQPLASFNDVCRNCNHVLEKHVSQLQ 644
           DN+ +   ND+    NH+L+KHV + Q
Sbjct: 171 DNKEMDDINDIVELVNHMLDKHVEEKQ 197


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 758 IVVNLFSVVVIFSLHRHKYVLYVYNSTEQPIHFC 657
           ++ NLFSV  + +LHR     YV+N+ E+    C
Sbjct: 662 LLANLFSVGSMLALHRPFIANYVHNNHEESQELC 695


>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
            35385254-35385372,35385701-35385811,35386068-35386595,
            35386702-35386881,35386957-35387556,35387646-35388066,
            35388183-35388280,35388372-35389260,35389366-35389544,
            35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 486  ACQTPDCNCNGWKTPVTQHAGKTPRADNQPLASFNDVCRNCNHVLEKHVSQLQGLPVAEV 665
            ACQ+P      ++TP     G +   D+ P ASF+    N N++  +++   QG P A +
Sbjct: 1347 ACQSPV-----FQTPAPTRRGLSVAVDS-PTASFHSGRPNFNNIYTENLDDFQGTPGATI 1400


>03_05_0813 -
           27894593-27894915,27896164-27896422,27896513-27896728,
           27896920-27897625,27897895-27898100
          Length = 569

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +3

Query: 708 MSMQREDDHNTKQVYYYLFKILRKCILTRSQPRIEGPLGQPPFERPSIAKAITNFVLYKF 887
           ++  R D HNTK      ++ L K +L R++P+   P  +   +R   A  I  F L   
Sbjct: 117 LAESRLDHHNTKTKLAKSWERLAKSLLLRAKPQPVLPHVRAAKKRMLFA-TIRGFYLQAM 175

Query: 888 NSLPQREWQTMYDXAKMFL-HCF 953
             LP  E +  Y  + +   HC+
Sbjct: 176 ARLPADELRARYHRSMLKAGHCY 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,221,584
Number of Sequences: 37544
Number of extensions: 459918
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)