Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D22
         (1162 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    48   2e-05
U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase ...    29   4.7  
AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator prot...    29   4.7  
Z81506-9|CAB04132.2|  164|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z81478-5|CAB03936.2|  164|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 19/192 (9%)
 Frame = +3

Query: 453 NKKLLKLAIYSACQTPDCNCNGWKTPVTQHAGKT-----PRA-----------DNQPLAS 584
           ++K  +L  +++C    C C G++ PV  H  +T      RA           D + L S
Sbjct: 8   DEKRRQLTYFTSCNAGTCQCRGFR-PVLNHEDETVERRATRAERENDFAPMTRDLETLGS 66

Query: 585 FNDV-CRNCNHVLEKHVSQLQGLPVAEVNRLLGAVVDVENIFMSMQRED-DHNTKQVYYY 758
              + CR C H +  H   L+ L   +++     + D++     +   D  H + Q  Y 
Sbjct: 67  EEIIECRTCGHSISFHAEPLKYLSQEDLDTYTDQISDLQTCCSELSEIDPSHESLQTLYI 126

Query: 759 LFKILRKCILTRSQPRIEGP-LGQPPFERPSIAKAITNFVLYKFNSLPQREWQTMYDXAK 935
             +IL K +  R+   ++ P +G+P FE  S++  I          +   E Q + +   
Sbjct: 127 TMQILLKSL--RTLTPVDVPFIGKPNFEPESLSPYILVKKFIASRPVDNAEKQRLAEIGT 184

Query: 936 MFLHCFNHXNFE 971
           +FL   NH   E
Sbjct: 185 LFLTEMNHWKLE 196


>U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase
           transcriptionalregulation mediator protein.
          Length = 246

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 612 HVLEKHVSQLQGLPVAEVNRLLGAVVDVENIFMSMQREDDHNTKQVYYYLFK 767
           +V+   V Q   +     +RLLGA+  + N F  +     +NT + YY+ FK
Sbjct: 105 YVINGSVHQAPDMYSLVQSRLLGALEPLRNAFGEVTNYSRYNTAKGYYWEFK 156


>AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator protein
           6 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 612 HVLEKHVSQLQGLPVAEVNRLLGAVVDVENIFMSMQREDDHNTKQVYYYLFK 767
           +V+   V Q   +     +RLLGA+  + N F  +     +NT + YY+ FK
Sbjct: 109 YVINGSVHQAPDMYSLVQSRLLGALEPLRNAFGEVTNYSRYNTAKGYYWEFK 160


>Z81506-9|CAB04132.2|  164|Caenorhabditis elegans Hypothetical
           protein F16H6.2 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 747 VYYYLFKILRKCILTRSQPRIEGPLGQPPFERPSIAKAITNFVL 878
           ++ +L  ++  CI T+ Q  I  P G   FERPS    I  F +
Sbjct: 2   IFLFLIPVVNSCIPTQ-QVEIPCPTGWEEFERPSGTWCIKTFAI 44


>Z81478-5|CAB03936.2|  164|Caenorhabditis elegans Hypothetical
           protein F16H6.2 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 747 VYYYLFKILRKCILTRSQPRIEGPLGQPPFERPSIAKAITNFVL 878
           ++ +L  ++  CI T+ Q  I  P G   FERPS    I  F +
Sbjct: 2   IFLFLIPVVNSCIPTQ-QVEIPCPTGWEEFERPSGTWCIKTFAI 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,680,862
Number of Sequences: 27780
Number of extensions: 412743
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)