Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D21
         (1142 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    32   0.009
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   5.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -2

Query: 772 GDGNHSPSGGPYARLSKRAIKKRSDCVYSLSLHEVSNYRNRVKMSH 635
           G GN+ P GGP + +S     K  D  +S SL E+SN+   VK SH
Sbjct: 530 GSGNNQPPGGPSSHVSAVLTCKVCDQAFS-SLKELSNH--MVKNSH 572


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 724 KRAIKKRSDCVYSLSLHEVSNYRN 653
           K  +KKR   V ++SLH + N R+
Sbjct: 11  KCPVKKRKCTVSNVSLHSLKNKRS 34


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 736 HTXHLMVSGYRRPWTSAMSGAE 801
           +T H+   G+  P+T  M G E
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVE 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,813
Number of Sequences: 336
Number of extensions: 3792
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33197234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)