Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D21
         (1142 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...    30   3.5  

>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 850 FFIDTVDXRTYSSSGLALPLTLLKSMGDGNHSP 752
           FF+D  D  T SS G+ +P T+      G +SP
Sbjct: 2   FFLDNTDSMTSSSRGITMPNTISSHEDVGGYSP 34


>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 135 IGXFCXLIDGLPNLSNRVLQLKPYARTXLVAKCNIKCKCXLFCSY 269
           IG    ++DG+P    +++ +K + R  +VA C+ +     +C++
Sbjct: 327 IGYQTLVLDGVPQNDKKMIDMKDHCRVNMVAACSSQVYATGWCAH 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,546
Number of Sequences: 27780
Number of extensions: 349688
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)