Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D18
         (1180 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p ...    53   2e-05
UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome a...    48   6e-04
UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4; n...    48   6e-04
UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep: Zgc:5...    47   8e-04
UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12...    41   0.054
UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma j...    37   1.2  

>UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p -
           Drosophila melanogaster (Fruit fly)
          Length = 64

 Score = 52.8 bits (121), Expect = 2e-05
 Identities = 26/51 (50%), Positives = 30/51 (58%)
 Frame = +1

Query: 193 ASXXITMRGXXXXXXXXXXXXXXXXXWLLALFIFVVCGSAVFQLIQSISLA 345
           AS  +TMRG                 WLLALFIFVVCGSA+FQ++QSI  A
Sbjct: 14  ASKYVTMRGNVPKSSKTKEGQYPVGPWLLALFIFVVCGSAIFQIVQSIRAA 64


>UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome
           attached membrane protein 4; n=1; Pan troglodytes|Rep:
           PREDICTED: similar to ribosome attached membrane protein
           4 - Pan troglodytes
          Length = 231

 Score = 47.6 bits (108), Expect = 6e-04
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 206 WLLALFIFVVCGSAIFQIIQSIRM 229


>UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4;
           n=33; Eumetazoa|Rep: Ribosome-attached membrane protein
           4 - Homo sapiens (Human)
          Length = 66

 Score = 47.6 bits (108), Expect = 6e-04
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


>UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep:
           Zgc:56419 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 66

 Score = 47.2 bits (107), Expect = 8e-04
 Identities = 19/24 (79%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALF+FVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFVFVVCGSAIFQIIQSIRM 64


>UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12.5;
           n=2; Bilateria|Rep: Putative uncharacterized protein
           T09A12.5 - Caenorhabditis elegans
          Length = 63

 Score = 41.1 bits (92), Expect = 0.054
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 196 SXXITMRGXXXXXXXXXXXXXXXXXWLLALFIFVVCGSAVFQLIQSISL 342
           S  +T RG                 WL+ LFIFVVCGSA+F++I+ I +
Sbjct: 15  SKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRYIKV 63


>UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02042 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 79

 Score = 36.7 bits (81), Expect = 1.2
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 274 LLALFIFVVCGSAVFQLIQSISLA 345
           +L L +FVVCGSAVF++IQ I +A
Sbjct: 55  ILGLIVFVVCGSAVFEIIQHIRMA 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,548,369
Number of Sequences: 1657284
Number of extensions: 13779608
Number of successful extensions: 23856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23847
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 117912272470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)