Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D18
         (1180 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029067-1|AAH29067.1|   65|Homo sapiens chromosome 13 open read...    49   3e-05
AL138960-2|CAI12995.1|   65|Homo sapiens RP11-269C23.1 protein.        49   3e-05
CR533472-1|CAG38503.1|   66|Homo sapiens SERP1 protein.                48   9e-05
BC112365-1|AAI12366.1|   66|Homo sapiens stress-associated endop...    48   9e-05
BC112364-1|AAI12365.1|   66|Homo sapiens stress-associated endop...    48   9e-05
BC108314-1|AAI08315.1|   66|Homo sapiens stress-associated endop...    48   9e-05
AF136975-1|AAG49436.1|   66|Homo sapiens ribosome attached membr...    48   9e-05
AB022427-1|BAA81895.1|   66|Homo sapiens SERP1 protein.                48   9e-05

>BC029067-1|AAH29067.1|   65|Homo sapiens chromosome 13 open reading
           frame 21 protein.
          Length = 65

 Score = 49.2 bits (112), Expect = 3e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = +1

Query: 196 SXXITMRGXXXXXXXXXXXXXXXXXWLLALFIFVVCGSAVFQLIQSISL 342
           S  IT RG                 WLLALF+FVVCGSA+FQ+IQSI +
Sbjct: 15  SKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRM 63


>AL138960-2|CAI12995.1|   65|Homo sapiens RP11-269C23.1 protein.
          Length = 65

 Score = 49.2 bits (112), Expect = 3e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = +1

Query: 196 SXXITMRGXXXXXXXXXXXXXXXXXWLLALFIFVVCGSAVFQLIQSISL 342
           S  IT RG                 WLLALF+FVVCGSA+FQ+IQSI +
Sbjct: 15  SKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRM 63


>CR533472-1|CAG38503.1|   66|Homo sapiens SERP1 protein.
          Length = 66

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


>BC112365-1|AAI12366.1|   66|Homo sapiens stress-associated
           endoplasmic reticulum protein 1 protein.
          Length = 66

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


>BC112364-1|AAI12365.1|   66|Homo sapiens stress-associated
           endoplasmic reticulum protein 1 protein.
          Length = 66

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


>BC108314-1|AAI08315.1|   66|Homo sapiens stress-associated
           endoplasmic reticulum protein 1 protein.
          Length = 66

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


>AF136975-1|AAG49436.1|   66|Homo sapiens ribosome attached membrane
           protein 4 protein.
          Length = 66

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


>AB022427-1|BAA81895.1|   66|Homo sapiens SERP1 protein.
          Length = 66

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WLLALFIFVVCGSA+FQ+IQSI +
Sbjct: 41  WLLALFIFVVCGSAIFQIIQSIRM 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,844,214
Number of Sequences: 237096
Number of extensions: 2032456
Number of successful extensions: 2865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16513869000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)