Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D18
         (1180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    41   0.001
Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    40   0.003
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 196 SXXITMRGXXXXXXXXXXXXXXXXXWLLALFIFVVCGSAVFQLIQSISL 342
           S  +T RG                 WL+ LFIFVVCGSA+F++I+ I +
Sbjct: 15  SKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRYIKV 63


>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +1

Query: 271 WLLALFIFVVCGSAVFQLIQSISL 342
           WL+ LF+FVVCGSAVF++I+ + +
Sbjct: 40  WLIGLFVFVVCGSAVFEIIRYVKM 63


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 399  VVILLCFR*QCSSWLR--DLSXAY*LDXLEHSRATHYEDEESKEP 271
            +V+L+CFR Q  +W R  D S    +       AT+  +EE++ P
Sbjct: 2813 IVVLVCFRKQIIAWFRKTDTSDNQHVALSHWDNATNRNEEENQNP 2857


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,209
Number of Sequences: 27780
Number of extensions: 348698
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)