Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D18
         (1180 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.98 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.98 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   5.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   5.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 980 LFXSDVKMNNFILII*NTPVTIDYGHCAFFFSNLQSIKG 864
           L   DVK+ N +L I N     D+G C      L SI G
Sbjct: 718 LVHRDVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 756


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 980 LFXSDVKMNNFILII*NTPVTIDYGHCAFFFSNLQSIKG 864
           L   DVK+ N +L I N     D+G C      L SI G
Sbjct: 756 LVHRDVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 794


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly protein
            9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -3

Query: 1022 NNYIIKINQTKYDXLFXSDVKMNNFILII*NTPVT--IDYGHCAFFFSNLQSI 870
            NN  I I   KY  +   D+  N     I N PV   I Y  C    +N  SI
Sbjct: 369  NNEYIWIVSNKYQKIANGDLNFNEVNFRILNAPVNQLIRYTRCENPKTNFFSI 421


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +2

Query: 740 NFIDDQGNPVHNPKMSMFPYILV*CKIINI*EHLINVKKNSFP*SIVDLKKK 895
           +  +D GNP+   K S    IL   ++ N+ + ++ V+ +     ++  ++K
Sbjct: 363 SMFNDSGNPILKAKPSEVVQILGWKELPNVGDEILEVENDKILQEVIKFRQK 414


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 327 PINKPXLNHXANWSTAIENTIK*QHYPSKVKAQFTPASLHRHE 455
           P NK    H A   TA+ N I   H P  ++A      + RH+
Sbjct: 77  PANKRFQAHCAGVITALNNVIDFLHDPGLMEASLI-GLVERHK 118


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 327 PINKPXLNHXANWSTAIENTIK*QHYPSKVKAQFTPASLHRHE 455
           P NK    H A   TA+ N I   H P  ++A      + RH+
Sbjct: 77  PANKRFQAHCAGVITALNNVIDFLHDPGLMEASLI-GLVERHK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,993
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40126833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)