Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D17
         (1331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    31   1.8  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    30   3.2  

>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/77 (32%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
 Frame = +3

Query: 711 PGLPGXXXRX*ILXPXPGPXPRXXTXXXLGGXAXPXXAPXXXXHPNXXXXPGXXXQASXG 890
           PG PG            GP P   T     G      AP    HP     PG   Q S G
Sbjct: 155 PGAPGNAGAPGQDSFGGGPGPAGPT-----GPTGDAGAPGQPGHPGSPGNPGRGGQRSRG 209

Query: 891 -PGXXXXXYRXGPXGGP 938
            PG        GP GGP
Sbjct: 210 LPGPSGRPGPQGPAGGP 226


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +3

Query: 801 GXAXPXXAPXXXXHPNXXXXPGXXXQASXG-PGXXXXXYRXGPXGGP 938
           G A    +P    HP     PG   Q S G PG        GP GGP
Sbjct: 173 GPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPPGPAGGP 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,584,803
Number of Sequences: 27780
Number of extensions: 133668
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3735997402
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)