Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_D16
(1197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 35 0.15
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.8
12_02_0299 - 17051570-17052474,17053542-17053755 30 3.1
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.1
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 30 3.1
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 5.5
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 7.2
02_05_0686 - 30900748-30902167,30903442-30904742 29 9.6
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 34.7 bits (76), Expect = 0.15
Identities = 27/112 (24%), Positives = 38/112 (33%)
Frame = -1
Query: 963 PPPXGGXPXPXXEXXPGXFXKXPPXXXGXXXXXFXXXPXXXXXGPXGGFSGXXLXFFXXX 784
PPP P P P + G + P G G +G ++
Sbjct: 58 PPPPVVTPTPQCPPPPS-YPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPP 116
Query: 783 XGXPPPXXGXXFFXFFRGGGXFXKTPPPXPFLXFXPFWXXFXKXFFXXXPPF 628
G G + GGG + PPP PFL + PF+ ++ PPF
Sbjct: 117 TGGGG-GGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFY------YYSPPPPF 161
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = -3
Query: 610 PPXXGGKXLXPPPXPGXXVFFXGEGXXAPKXXPXXPXGXGFFXXXKXXPPPPP 452
PP + + PPP PG F P G K PPPPP
Sbjct: 642 PPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPP 694
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 30.3 bits (65), Expect = 3.1
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = -2
Query: 653 FFXXXXPPFXGXPXSPXXGGXXPXPPPKXRXXGFFXGGRGXGPXXXXPXPXGXGVFXXXX 474
F PPF P P P PPP F P P P +F
Sbjct: 231 FLTPPPPPFLPFPLPPIPFLTPPSPPPP--AFPFPLPPWPWAPPPAFPFPHLPPIFSPPS 288
Query: 473 KXPPPPP 453
PPPPP
Sbjct: 289 PPPPPPP 295
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 927 PXGGXXPPXXGGGGXKPPXXXXXGG 1001
P GG P GGGG +PP GG
Sbjct: 92 PGGGGAPGPLGGGGARPPGGGGGGG 116
Score = 29.1 bits (62), Expect = 7.2
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +3
Query: 885 GXXGGFXXXXXGGFPXGGXXPPXXGGGGXKPPXXXXXGGXXXGKXXFXTPPG 1040
G GG G GG PP GGGG GG G PPG
Sbjct: 112 GGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG-GALARPPG 162
Score = 29.1 bits (62), Expect = 7.2
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +2
Query: 767 GGGKPXXXXKKXRXXPEKPPXGPXXXXXGXKXKXXXFXPWXXGGXXXXXPGXXSXXGXGX 946
GGG P +PP P G + GG PG G
Sbjct: 114 GGGPPSLPPGAGGGGGARPP-APGGGGGGGAPRRV-LGGGGGGGALARPPGGGRGGALGR 171
Query: 947 PPXGGGXXKTPPXXPXXGXXXG 1012
PP GGG P P G G
Sbjct: 172 PPGGGGGGGGPGRAPGGGGGGG 193
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 876 FXXGXXGGFXXXXXGGFPXGGXXPPXXGGGG 968
F G GGF GGFP GG G GG
Sbjct: 324 FPGGGGGGFSGGGGGGFPGGGCGGITGGDGG 354
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.5 bits (63), Expect = 5.5
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = -3
Query: 580 PPPXPGXXVFFXGEGXXAPKXXPXXPXGXGFFXXXKXXPPPPPXXXKKXXPLFFXNFF 407
PPP P G P P P PPPPP + PL N F
Sbjct: 235 PPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPPPRPLQPSPLAGTNEF 292
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.1 bits (62), Expect = 7.2
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +1
Query: 526 GPXPLP-PXKKPXXRXLGGGXGXXPPXXGEXGXPXKGGXXXKKXFXKXGPK 675
GP P P P KP G PP G P K G K K GPK
Sbjct: 156 GPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPK 206
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 9.6
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -2
Query: 635 PPFXGXPXSPXXGGXXPXPPPKXRXXGFFXGGRGXGPXXXXPXPXGXGVFXXXXKXPPPP 456
PP G P P G P PPPK GP P P G PPPP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPK-------------GPSPPPPPPPG----GKKGGPPPPP 381
Query: 455 P 453
P
Sbjct: 382 P 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,345,577
Number of Sequences: 37544
Number of extensions: 523423
Number of successful extensions: 1248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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