Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D13
         (1174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    32   0.18 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    30   0.54 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.8  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    27   5.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   8.8  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 465 CSMEQMINIR--DQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSI 638
           C++ +M  +   ++++++ R   +   ++D+P E   ++    DK E   KSLE++S S+
Sbjct: 3   CNLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSV 62


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 637 IEFDNCSKLLTSCSILSL-----DAEFSKLSSVGLSTSAHKRKCNLAKCSC 500
           +EF  CS L +S  ILS      + E  KL   G+STSA + K   A C C
Sbjct: 578 LEFQ-CSDLSSSIDILSKQDEEHEKEKRKLKDTGVSTSAEELKTFRAMCKC 627


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 195  TRHQLSSAAASXTSKNHAKVLTSTGNSLN 281
            T HQ+++  +  TS  H K+ T+T  SLN
Sbjct: 1359 TTHQINALESVHTSFQHFKLFTNTKQSLN 1387


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +3

Query: 255 LTSTGNSLNASTQVSYVNXSRLQXAFMRSNXTNXPKXIPKXTPDVKXMEKALLELLDDFH 434
           +TS G +LN ST + Y N   +    +    T   K     T D+K +EK L+  LD F 
Sbjct: 160 ITSHGLALNVSTDLKYFNY--IVGCGLYGKNTTSFKDQGVFT-DLKSVEKVLVNNLDSFL 216

Query: 435 TGK 443
             K
Sbjct: 217 MSK 219


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 777 YHLENVPIQLPIILYCLALQN 839
           + LE V +Q P+ + CLA++N
Sbjct: 39  FSLEKVQLQFPVSIRCLAVEN 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,521
Number of Sequences: 5004
Number of extensions: 67854
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)