Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_D13
(1174 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC108717-1|AAI08718.1| 274|Homo sapiens coiled-coil domain cont... 90 2e-17
BC080566-1|AAH80566.1| 237|Homo sapiens CCDC28A protein protein. 90 2e-17
BC013019-1|AAH13019.1| 130|Homo sapiens CCDC28A protein protein. 90 2e-17
BC004464-1|AAH04464.1| 162|Homo sapiens CCDC28A protein protein. 90 2e-17
AY167571-1|AAN87344.1| 274|Homo sapiens chemokine C-C motif rec... 90 2e-17
AL121834-1|CAI42866.1| 274|Homo sapiens coiled-coil domain cont... 90 2e-17
BC022848-1|AAH22848.1| 200|Homo sapiens coiled-coil domain cont... 81 6e-15
AL049795-5|CAB75616.1| 200|Homo sapiens coiled-coil domain cont... 81 6e-15
BC002462-1|AAH02462.1| 241|Homo sapiens CCDC28B protein protein. 74 1e-12
AL049795-4|CAI22057.1| 241|Homo sapiens coiled-coil domain cont... 74 1e-12
L04510-1|AAA35940.1| 574|Homo sapiens nucleotide binding protei... 31 8.1
BC022510-1|AAH22510.1| 574|Homo sapiens tripartite motif-contai... 31 8.1
AF230399-1|AAG50178.1| 546|Homo sapiens tripartite motif protei... 31 8.1
AF230398-1|AAG50177.1| 569|Homo sapiens tripartite motif protei... 31 8.1
AF230397-1|AAG50176.1| 574|Homo sapiens tripartite motif protei... 31 8.1
>BC108717-1|AAI08718.1| 274|Homo sapiens coiled-coil domain
containing 28A protein.
Length = 274
Score = 89.8 bits (213), Expect = 2e-17
Identities = 42/89 (47%), Positives = 65/89 (73%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTED 563
DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++ ED
Sbjct: 174 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 233
Query: 564 NFENSASRDKMEQLVKSLEQLSNSIERLH 650
+AS +++L+ LE+L++SI++LH
Sbjct: 234 K-RKTASDSNLDRLLSDLEELNSSIQKLH 261
>BC080566-1|AAH80566.1| 237|Homo sapiens CCDC28A protein protein.
Length = 237
Score = 89.8 bits (213), Expect = 2e-17
Identities = 42/89 (47%), Positives = 65/89 (73%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTED 563
DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++ ED
Sbjct: 137 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 196
Query: 564 NFENSASRDKMEQLVKSLEQLSNSIERLH 650
+AS +++L+ LE+L++SI++LH
Sbjct: 197 K-RKTASDSNLDRLLSDLEELNSSIQKLH 224
>BC013019-1|AAH13019.1| 130|Homo sapiens CCDC28A protein protein.
Length = 130
Score = 89.8 bits (213), Expect = 2e-17
Identities = 42/89 (47%), Positives = 65/89 (73%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTED 563
DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++ ED
Sbjct: 30 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 89
Query: 564 NFENSASRDKMEQLVKSLEQLSNSIERLH 650
+AS +++L+ LE+L++SI++LH
Sbjct: 90 K-RKTASDSNLDRLLSDLEELNSSIQKLH 117
>BC004464-1|AAH04464.1| 162|Homo sapiens CCDC28A protein protein.
Length = 162
Score = 89.8 bits (213), Expect = 2e-17
Identities = 42/89 (47%), Positives = 65/89 (73%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTED 563
DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++ ED
Sbjct: 62 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 121
Query: 564 NFENSASRDKMEQLVKSLEQLSNSIERLH 650
+AS +++L+ LE+L++SI++LH
Sbjct: 122 K-RKTASDSNLDRLLSDLEELNSSIQKLH 149
>AY167571-1|AAN87344.1| 274|Homo sapiens chemokine C-C motif
receptor-like 1 adjacent protein.
Length = 274
Score = 89.8 bits (213), Expect = 2e-17
Identities = 42/89 (47%), Positives = 65/89 (73%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTED 563
DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++ ED
Sbjct: 174 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 233
Query: 564 NFENSASRDKMEQLVKSLEQLSNSIERLH 650
+AS +++L+ LE+L++SI++LH
Sbjct: 234 K-RKTASDSNLDRLLSDLEELNSSIQKLH 261
>AL121834-1|CAI42866.1| 274|Homo sapiens coiled-coil domain
containing 28A protein.
Length = 274
Score = 89.8 bits (213), Expect = 2e-17
Identities = 42/89 (47%), Positives = 65/89 (73%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTED 563
DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++ ED
Sbjct: 174 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 233
Query: 564 NFENSASRDKMEQLVKSLEQLSNSIERLH 650
+AS +++L+ LE+L++SI++LH
Sbjct: 234 K-RKTASDSNLDRLLSDLEELNSSIQKLH 261
>BC022848-1|AAH22848.1| 200|Homo sapiens coiled-coil domain
containing 28B protein.
Length = 200
Score = 81.4 bits (192), Expect = 6e-15
Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 12/105 (11%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV--DK 551
DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C + D+
Sbjct: 87 DVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDE 146
Query: 552 PTEDNFENSASRDK--------MEQLVKSLEQLSNSIERLHCDTN 662
ED ++ ++QL+ +LE LSNSI++LH N
Sbjct: 147 EEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
>AL049795-5|CAB75616.1| 200|Homo sapiens coiled-coil domain
containing 28B protein.
Length = 200
Score = 81.4 bits (192), Expect = 6e-15
Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 12/105 (11%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV--DK 551
DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C + D+
Sbjct: 87 DVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDE 146
Query: 552 PTEDNFENSASRDK--------MEQLVKSLEQLSNSIERLHCDTN 662
ED ++ ++QL+ +LE LSNSI++LH N
Sbjct: 147 EEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
>BC002462-1|AAH02462.1| 241|Homo sapiens CCDC28B protein protein.
Length = 241
Score = 73.7 bits (173), Expect = 1e-12
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV--DK 551
DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C + D+
Sbjct: 87 DVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDE 146
Query: 552 PTEDNF-ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 677
ED E K ++L+QL +++E L P T
Sbjct: 147 EEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSMYPFQGT 189
>AL049795-4|CAI22057.1| 241|Homo sapiens coiled-coil domain
containing 28B protein.
Length = 241
Score = 73.7 bits (173), Expect = 1e-12
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = +3
Query: 384 DVKXMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV--DK 551
DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C + D+
Sbjct: 87 DVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDE 146
Query: 552 PTEDNF-ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 677
ED E K ++L+QL +++E L P T
Sbjct: 147 EEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSMYPFQGT 189
>L04510-1|AAA35940.1| 574|Homo sapiens nucleotide binding protein
protein.
Length = 574
Score = 31.1 bits (67), Expect = 8.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 405 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 539
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>BC022510-1|AAH22510.1| 574|Homo sapiens tripartite
motif-containing 23 protein.
Length = 574
Score = 31.1 bits (67), Expect = 8.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 405 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 539
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>AF230399-1|AAG50178.1| 546|Homo sapiens tripartite motif protein
TRIM23 gamma protein.
Length = 546
Score = 31.1 bits (67), Expect = 8.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 405 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 539
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>AF230398-1|AAG50177.1| 569|Homo sapiens tripartite motif protein
TRIM23 beta protein.
Length = 569
Score = 31.1 bits (67), Expect = 8.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 405 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 539
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>AF230397-1|AAG50176.1| 574|Homo sapiens tripartite motif protein
TRIM23 alpha protein.
Length = 574
Score = 31.1 bits (67), Expect = 8.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 405 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 539
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,106,484
Number of Sequences: 237096
Number of extensions: 2210552
Number of successful extensions: 4109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4102
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16403776540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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