Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D12
         (1154 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   2.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   4.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   5.8  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 800 HNKMLKLRKQIFLTNKCSQVLCDFSKTPTS 711
           HN+   + K   L NK + +L   S TP S
Sbjct: 131 HNQQQSVEKSSKLKNKSAPILTKTSPTPVS 160


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 652 CFGSFSF*MKYVFFYLDNFCD 714
           CF S+ +   ++FF+    CD
Sbjct: 63  CFNSYMYAFTHIFFFFAICCD 83


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 288 CTIEXQLKVIKGCVIK 335
           C I  QL+V  GCV K
Sbjct: 74  CVISRQLRVSHGCVSK 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,619
Number of Sequences: 336
Number of extensions: 3375
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33609622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)