Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D10
         (1175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...   109   1e-24
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    27   6.7  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score =  109 bits (261), Expect = 1e-24
 Identities = 50/106 (47%), Positives = 73/106 (68%)
 Frame = +1

Query: 373 FVLNXGKRLEAEAXIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQEDYDRLPEE 552
           FV   G+ +  E   GD++LD+   N++++EG  ACEG++ CSTCHVI+  E Y+ L + 
Sbjct: 523 FVTPEGREIMIEGNEGDSILDLAHANNIDLEG--ACEGSVACSTCHVIVDPEHYELL-DP 579

Query: 553 PSDEERDMLDLAYGLTDTSRLGCQITLTKDLDGLEIIVPETINDAR 690
           P ++E DMLDLA+GL +TSRLGCQ+ L KDLDG+ + +P    + R
Sbjct: 580 PEEDEEDMLDLAFGLEETSRLGCQVLLRKDLDGIRVRIPAQTRNIR 625


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 544 VIYHNPPASVSHGKWNRSGYPHRPRSPQYL 455
           V+ H PP   SH       YP RP SP+ +
Sbjct: 130 VVNHLPPFPASHTYMATPVYPVRPTSPKQI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,832
Number of Sequences: 5004
Number of extensions: 48865
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)