Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D10
         (1175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0253 + 16116614-16116671,16117194-16117258,16117596-161176...   106   4e-23
07_01_0076 + 562248-562430,562540-562637,562887-562954,563376-56...   103   2e-22
09_04_0724 - 19744807-19745283                                         51   2e-06
03_05_0209 + 22014556-22015308                                         29   5.4  
01_05_0383 + 21667798-21668079                                         29   5.4  
03_06_0471 + 34169562-34169892,34170121-34170347                       29   7.1  

>09_04_0253 +
           16116614-16116671,16117194-16117258,16117596-16117663,
           16120032-16120138,16120429-16120478,16120552-16120634,
           16120708-16120800,16122349-16122379,16122428-16122521,
           16122563-16122612
          Length = 232

 Score =  106 bits (254), Expect = 4e-23
 Identities = 49/99 (49%), Positives = 67/99 (67%)
 Frame = +1

Query: 373 FVLNXGKRLEAEAXIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQEDYDRLPEE 552
           FV   G+    +  IG ++L+    ND+ +EG  ACEG+L CSTCHVI+   DY    E+
Sbjct: 69  FVDKDGEEKLVKVPIGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVTDVDYYNKLED 126

Query: 553 PSDEERDMLDLAYGLTDTSRLGCQITLTKDLDGLEIIVP 669
           P DEE DMLDLA+GLT+TSRLGCQ+  + +LDG+ + +P
Sbjct: 127 PVDEENDMLDLAFGLTETSRLGCQVIASPELDGMRLALP 165


>07_01_0076 +
           562248-562430,562540-562637,562887-562954,563376-563421,
           563661-563767,563978-564027,564120-564202,564705-564819
          Length = 249

 Score =  103 bits (248), Expect = 2e-22
 Identities = 47/99 (47%), Positives = 65/99 (65%)
 Frame = +1

Query: 373 FVLNXGKRLEAEAXIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQEDYDRLPEE 552
           FV   G        +G ++L+    ND+ +EG  ACEG+L CSTCHVI+   +Y    E+
Sbjct: 137 FVNKDGTEQTISVPVGMSILEAAHENDIELEG--ACEGSLACSTCHVIVMDVNYYNKLED 194

Query: 553 PSDEERDMLDLAYGLTDTSRLGCQITLTKDLDGLEIIVP 669
           P+DEE DMLDLA+GLT+TSRLGCQ+    +LDG+ + +P
Sbjct: 195 PTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALP 233


>09_04_0724 - 19744807-19745283
          Length = 158

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
 Frame = +1

Query: 388 GKRLEAEAXIGDTLLDVVVNNDLNIEGYGACEGTLTCST-CHVILKQEDYDRLPEEPSDE 564
           G R E     G T+L  + N  L        E    CS  C V + QE  D+LP  PS E
Sbjct: 54  GARREVVGLSGQTVLRALANAGLIEPESHRLEEIDACSAECEVHIAQEWLDKLPP-PSYE 112

Query: 565 ERDMLDLAYG---LTDTSRLGCQITLTKDLDGLEIIVPE 672
           ER +L  A     L   +RLGCQ+ LT +L G+ + VPE
Sbjct: 113 ERYVLTRASRNRELNKHARLGCQVVLTPELQGMVVAVPE 151


>03_05_0209 + 22014556-22015308
          Length = 250

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 543 TGGAQRRGTRHAGPGIRPDGYVAARLPDHSDQGPGRAGDHSTRDYQRREKL 695
           TG   ++   H   G+ P     + +PDHS + P R  D ++ D    E++
Sbjct: 107 TGVGDKQEQHHHQVGVEPSSATESCVPDHS-EAPYRDNDDASEDCSHGERM 156


>01_05_0383 + 21667798-21668079
          Length = 93

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 616 RAATYPSGRMPGPACRVPRRWAPPVIYHNPPASVSHG 506
           R   YP G +P P     ++W+PPV+     +S+ HG
Sbjct: 47  RPKPYPDGGLPDPT----QQWSPPVLTSTIMSSIWHG 79


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 21/64 (32%), Positives = 26/64 (40%)
 Frame = -2

Query: 655 PARPGPWSE*SGNRAATYPSGRMPGPACRVPRRWAPPVIYHNPPASVSHGKWNRSGYPHR 476
           P  PG +    G  +A  P G+ P PA   P    PP  Y         G +  SGYP +
Sbjct: 36  PNSPGQYPTPGGYPSA--PPGQYP-PAGGYPGAQYPPSGYPPSQGGYPPGAYPPSGYPQQ 92

Query: 475 PRSP 464
           P  P
Sbjct: 93  PGYP 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,801,654
Number of Sequences: 37544
Number of extensions: 450734
Number of successful extensions: 1036
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3596576368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)