Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D07
         (1281 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000066070E Cluster: Homolog of Homo sapiens "H2A his...    38   0.42 
UniRef50_UPI000065E2E3 Cluster: Homolog of Homo sapiens "Histone...    38   0.42 
UniRef50_Q4SKJ3 Cluster: Histone H4; n=3; Euteleostomi|Rep: Hist...    38   0.42 
UniRef50_Q01FF9 Cluster: Histone H4; n=1; Ostreococcus tauri|Rep...    38   0.42 
UniRef50_A3BZ47 Cluster: Histone H4; n=2; Eukaryota|Rep: Histone...    38   0.42 
UniRef50_A7SHX4 Cluster: Predicted protein; n=9; Nematostella ve...    38   0.42 
UniRef50_P62805 Cluster: Histone H4; n=364; root|Rep: Histone H4...    38   0.42 

>UniRef50_UPI000066070E Cluster: Homolog of Homo sapiens "H2A
           histone family, member X (H2AFX), mRNA; n=2; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "H2A histone
           family, member X (H2AFX), mRNA - Takifugu rubripes
          Length = 325

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 35  IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94

Query: 420 G 422
           G
Sbjct: 95  G 95


>UniRef50_UPI000065E2E3 Cluster: Homolog of Homo sapiens "Histone 1,
           H2ai; n=2; Takifugu rubripes|Rep: Homolog of Homo
           sapiens "Histone 1, H2ai - Takifugu rubripes
          Length = 370

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 35  IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94

Query: 420 G 422
           G
Sbjct: 95  G 95


>UniRef50_Q4SKJ3 Cluster: Histone H4; n=3; Euteleostomi|Rep: Histone
           H4 - Tetraodon nigroviridis (Green puffer)
          Length = 234

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 166 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 225

Query: 420 G 422
           G
Sbjct: 226 G 226


>UniRef50_Q01FF9 Cluster: Histone H4; n=1; Ostreococcus tauri|Rep:
           Histone H4 - Ostreococcus tauri
          Length = 282

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 184 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 243

Query: 420 G 422
           G
Sbjct: 244 G 244


>UniRef50_A3BZ47 Cluster: Histone H4; n=2; Eukaryota|Rep: Histone H4
           - Oryza sativa subsp. japonica (Rice)
          Length = 285

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 217 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 276

Query: 420 G 422
           G
Sbjct: 277 G 277


>UniRef50_A7SHX4 Cluster: Predicted protein; n=9; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 222

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 35  IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94

Query: 420 G 422
           G
Sbjct: 95  G 95


>UniRef50_P62805 Cluster: Histone H4; n=364; root|Rep: Histone H4 -
           Homo sapiens (Human)
          Length = 103

 Score = 38.3 bits (85), Expect = 0.42
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDVXCAXGXP 419
           IRR  R  G K +SGLIYEE+ G   +    VI D     E   R TV   DV  A    
Sbjct: 35  IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94

Query: 420 G 422
           G
Sbjct: 95  G 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,720,177
Number of Sequences: 1657284
Number of extensions: 3131302
Number of successful extensions: 9228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6942
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 130794573157
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)