Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D07
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    33   0.11 
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    33   0.11 
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    33   0.11 

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDV 398
           IRR  R  G K +S L+YEE+     +    VI D     E   R TV   DV
Sbjct: 35  IRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDV 398
           IRR  R  G K +S L+YEE+     +    VI D     E   R TV   DV
Sbjct: 35  IRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +3

Query: 240 IRRXXRXSGXKXMSGLIYEESGGXXXMCXXXVIXDXGG*XEXVWRNTVXXXDV 398
           IRR  R  G K +S L+YEE+     +    VI D     E   R TV   DV
Sbjct: 35  IRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,088
Number of Sequences: 5004
Number of extensions: 9071
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)