Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D06
         (1165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509...    33   0.43 
05_04_0046 - 17482792-17483124                                         31   2.3  
04_04_1479 - 33888521-33888853                                         31   2.3  
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209...    29   5.3  

>08_02_0523 +
           18150425-18150629,18150822-18150881,18150882-18150967,
           18151802-18151948,18152712-18152835,18152990-18153366
          Length = 332

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 377 NKSSMCRFCYQTDKWEHRCEQKANCNSLASPLKYYLTNCTVSDDVICLGKRRFLKK 544
           + +  CR C +TD  E  C +  +CNS      Y++T   +    +C G ++F+ +
Sbjct: 53  SSAGCCRICLETDS-ELDCNKYKSCNSTFFVHAYHVTGDELISPCMCKGTQQFVHR 107


>05_04_0046 - 17482792-17483124
          Length = 110

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +2

Query: 254 CSSLLYPCITCNRSIACXYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 433
           C S + PC        C YG F    C     V+C G+   + +  C+ C Q +K    C
Sbjct: 33  CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85

Query: 434 EQKANCNSLASPLKY 478
            +  N  S  + L Y
Sbjct: 86  PKIVNLGSAKTDLFY 100


>04_04_1479 - 33888521-33888853
          Length = 110

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +2

Query: 254 CSSLLYPCITCNRSIACXYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 433
           C S + PC        C YG F    C     V+C G+   + +  C+ C Q +K    C
Sbjct: 33  CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85

Query: 434 EQKANCNSLASPLKY 478
            +  N  S  + L Y
Sbjct: 86  PKIVNLGSAKTDLFY 100


>01_01_0257 +
           2097785-2097797,2098080-2098189,2098299-2098392,
           2098786-2098974,2099061-2099120,2099231-2099391
          Length = 208

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 497 VSDDVICLGKRRFLKKVRCSWTSG-TRW 577
           V+ DVIC G++ FLK  R S+ SG T W
Sbjct: 46  VTGDVICHGEKSFLKDGRKSFPSGHTSW 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,341,244
Number of Sequences: 37544
Number of extensions: 456270
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)