Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D06
         (1165 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    26   2.4  
EF519367-1|ABP68476.1|  506|Anopheles gambiae LRIM1 protein.           24   7.4  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    24   7.4  

>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = +2

Query: 326 YTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRCEQKANCNSLASPLKYYLTNCTVSD 505
           Y C  +  V        N S++C  C  +      CE +  C S A P +     C  S+
Sbjct: 407 YRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLAATCEAEVRCASCAGPHRMGSAQCVQSN 466


>EF519367-1|ABP68476.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 320 YNYTCTVKPKVVCQGLKTFNKSS 388
           YN+T  VK +VV   LKT + SS
Sbjct: 200 YNFTYDVKGQVVFAKLKTLDLSS 222


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +2

Query: 356 CQGLKTFNKSSMCRFCYQTDKWEHRCEQKANCNSLASPLKYYLTNCTVS 502
           CQG    N+SS+C  C   +     C     C     P +    +C V+
Sbjct: 249 CQGT---NRSSLCIRCGAANHKAVNCTNDVKCLLCGGPHRIAAASCAVT 294


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 906,269
Number of Sequences: 2352
Number of extensions: 16880
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 131207787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)