Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_D05
(1322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.26
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.27
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.47
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 8.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.62
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -1
Query: 1172 PPPPPPXXXGGPPPKXXXXXXXXXXXPPXXXXXGGXXXXXXPPRGGGPPXXXXXPPXXPP 993
PPPPP G PP PP PP+G P PP PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP-----PP--PP 365
Query: 992 P 990
P
Sbjct: 366 P 366
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -1
Query: 743 PPPQGGXXFFGXXGGGGXPXXPPPPPPPXGGXXPGXXP 630
PPP G G PPPPPP G P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Score = 26.2 bits (55), Expect(2) = 0.26
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -1
Query: 764 KXPXGGXPPPQGGXXFFGXXGGGGXPXXPPPPPPP 660
K P PP + G PPPPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 23.8 bits (49), Expect(2) = 0.26
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -1
Query: 677 PPPPPPXGGXXPGXXP 630
PPPPPP G P
Sbjct: 361 PPPPPPRSAPSTGRQP 376
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.27
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = -1
Query: 1175 APPPPPPXXXGGPPPKXXXXXXXXXXXPPXXXXXGGXXXXXXPP--RGGGPPXXXXXPPX 1002
+PPPPPP P PP GG PP G GPP PP
Sbjct: 731 SPPPPPPAVIVPTP------APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP-----PPP 779
Query: 1001 XPPP 990
PPP
Sbjct: 780 PPPP 783
Score = 31.5 bits (68), Expect = 0.27
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 871 PPPPPPGXGXEXXPXPPGXKKGXXGGG 791
PPPPPPG P PP GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.82
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 752 GGXPPPQGGXXFFGXXGGGGXPXXPPPPPPPXGG 651
GG PPP G G G P PPPP GG
Sbjct: 759 GGPPPPPPPP---GVAGAGPPPPPPPPPAVSAGG 789
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 773 GXPPPXXPPXXPFFXXGGXGXXFPPXPXGGGGGXXXFPPPP 895
G PPP PP P G PP P GG + P P
Sbjct: 759 GGPPPPPPP--PGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 613 GGXPPRWGXNXPPPXGGGXXPPPPP 539
GG PP PPP G PPPPP
Sbjct: 759 GGPPPP----PPPPGVAGAGPPPPP 779
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 580 PPPXGGGXXPPPPPXXRGGXXP 515
P P GG PPPPP G P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGP 775
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 680 PPPPPPPXGGXXPGXXP 630
PPPPPPP G G P
Sbjct: 761 PPPPPPPPGVAGAGPPP 777
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 779 PPPXXPPXXPFFXXGGXGXXFPPXPXGGGGGXXXFPPPPXGV 904
P P P P G PP P G G PPPP V
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = -1
Query: 1178 GAPPPPPP--XXXGGPPP 1131
G PPPPPP GPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPP 777
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = -3
Query: 888 GGXXXXPPPPPXGXGGKXSPXPPXXKKGXXGGXXGGGXPXGE 763
GG PPPP G P PP G P E
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAE 800
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Frame = -2
Query: 580 PPPX---GGGXXPPPPPXXRGGXXP 515
PPP GG PPPPP G P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.47
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 689 PXXPPPPPPPXGGXXPGXXP 630
P PPPPPPP G P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPP 25
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 871 PPPPPPGXGXEXXPXPP 821
PPPPPPG P PP
Sbjct: 11 PPPPPPGFEPPSQPPPP 27
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 758 PXGGXPPPQGGXXFFGXXGGGGXPXXPPPPPPP 660
P G PPP F P PPPPPPP
Sbjct: 5 PPGNPPPPPPPPGF-------EPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 871 PPPPPPGXGXEXXPXPP 821
PPPPPP G E PP
Sbjct: 9 PPPPPPPPGFEPPSQPP 25
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 689 PXXPPPPPPPXGGXXPGXXP 630
P PPPPPP G P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQP 24
Score = 25.0 bits (52), Expect(2) = 3.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 1178 GAPPPPPPXXXGGPP 1134
G PPPPPP PP
Sbjct: 7 GNPPPPPPPPGFEPP 21
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 871 PPPPPPG 851
PPPPPPG
Sbjct: 25 PPPPPPG 31
Score = 21.4 bits (43), Expect(2) = 6.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 901 PXRGGGKXXXPPPPPP 854
P G PPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPP 29
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 1031 PPXXXXXPPXXPPP 990
PP PP PPP
Sbjct: 13 PPPPGFEPPSQPPP 26
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -3
Query: 894 GGGGXXXXPPPPPXGXGGKXSPXPPXXKKGXXGGXXGG 781
G GG PPP P G GG G GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +2
Query: 992 GGXXXGXXXXXGGXPP-PGGGXXXXXSPPGXXXXGGXXXFXXXXXXFXGGXPPXXLGGG 1165
GG G GG PP PGG GG F F GG P GGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG--PGGFGGG 243
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +3
Query: 774 GXPPPXPPPXXPFXXPGGXGXXSXPXPGGGGGGXXXFPPPRXGF 905
G PPP P F GG G GG GGG F GF
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHG-GHGGFGGGPGGFEGGPGGF 240
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 713 GXXGGGGXPXXPPPPPP 663
G GG P PPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 698 GGXPXXPPPPPPP 660
G P PPPPPPP
Sbjct: 939 GVMPAFPPPPPPP 951
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.0 bits (47), Expect(2) = 8.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 689 PXXPPPPPP 663
P PPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 21.4 bits (43), Expect(2) = 8.7
Identities = 9/31 (29%), Positives = 9/31 (29%)
Frame = -1
Query: 758 PXGGXPPPQGGXXFFGXXGGGGXPXXPPPPP 666
P PP P PPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,668
Number of Sequences: 5004
Number of extensions: 45938
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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