Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D04
         (1183 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   1.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 478 PMEILNFFMKGNLTSINLSHNRIPSLNQVPRVSSKIEKLWMEENPL 615
           P ++  F   GNL  ++ SHNR+ SL       + +E+L +  N L
Sbjct: 312 PNDLFRFL--GNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLL 355



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
 Frame = +1

Query: 508 GNLTSI---NLSHNRIPSLNQVPRVSSKIEKLWMEENPL-----CETLDASTYIKDILFK 663
           GN++S+   NL +N + ++  V    +++  L +E NP+        L A+  ++++  K
Sbjct: 487 GNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLGAANQLEELNLK 546

Query: 664 FPRLLELDG---VKLNHHRT----YLPSIRNFVVPAALHSNHAI 774
              L  L+     K+   RT       +I+NF +P+ L  N  +
Sbjct: 547 NIDLTVLESGAFCKMQPLRTLKIGVYRNIKNFNIPSILQFNDGL 590


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,805
Number of Sequences: 336
Number of extensions: 3955
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34537495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)