Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D04
         (1183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    49   1e-06
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   1.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.8  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   6.7  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    26   8.9  

>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 596

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
 Frame = +1

Query: 514  LTSINLSHNRIPSLNQVPRVSSK-----IEKLWMEENPLCETLD--ASTYIKDILFKFPR 672
            L +++L++NRI SL+ +   S K     +++L +  NP+  T    A  Y ++++ +FP+
Sbjct: 242  LLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPIVTTFANRAMDYQREMVSRFPK 301

Query: 673  LLELDGVKLNHHRTYLPSIRNFVVPAA----LHSNHAIDEFLAIFFSYYDDPFRHNRKYL 840
            L  LDG  +N       S   F V  +    + +   ++ FLA FF  +D+    NR  L
Sbjct: 302  LRLLDGNSINSEIIASQSTVPFPVYQSFFDKVETEQIVNSFLAAFFKGWDE----NRSAL 357

Query: 841  AN-LYDVEAKFSIS-------TCFTSR-EQRDLPHYMNHTRNIMXMXMQACSLXGARIYN 993
             N LY   A FSIS       T F+ + + +    Y   +RN++    Q  S   +R++N
Sbjct: 358  VNQLYSPNATFSISLNASNVRTNFSQKTDTKKWGAYKMKSRNLLYSQSQKES--KSRLFN 415

Query: 994  G-EAVLAILXSLXETI-XXPXISRWXF 1068
            G E +   + SL  T       S+W F
Sbjct: 416  GHEEISNAVKSLPATAHDLSDRSQWVF 442


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +1

Query: 619 ETLDASTYIKDILFKFPRLLELDGVKLNHHRTYLPSIRNFVVPAALHSNHAIDEFLAIFF 798
           ETL A  Y+  +      + E  G  L    T+  S+RN VV A L      D+ + IF+
Sbjct: 33  ETLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFY 92

Query: 799 SYYDDPFRHN 828
           S  +  FRH+
Sbjct: 93  S-NELQFRHS 101


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 276  LGVIASMYKGKPSDLXSF 223
            L ++ S+YKGK SDL SF
Sbjct: 3511 LDILPSLYKGKASDLISF 3528


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 176 RXNQKSQXVISLHSPKK 226
           + N+ SQ VISLHSPK+
Sbjct: 154 KVNELSQDVISLHSPKE 170


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 802 YYDDPFRHNRKYLANLYDVEAKFSISTCFTSREQRDL 912
           Y  DP+R+  K   + YD+  +         REQRD+
Sbjct: 362 YLVDPYRYRVKRKESFYDLAVRLEPLILELGREQRDV 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,314
Number of Sequences: 5004
Number of extensions: 64615
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)