Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D04
         (1183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     32   1.0  
04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280     29   7.2  
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   7.2  
11_04_0447 - 17829828-17829868,17829958-17830010,17830120-178302...    29   9.5  

>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 481 MEILNFFMKGNLTSINLSHNRIPSLNQVPRVSSKIEKL 594
           +E LNF     LTSINLSHNR+  +  +P+    +++L
Sbjct: 92  LEALNFSALTTLTSINLSHNRLTGM--IPQSIMSLKEL 127


>04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280
          Length = 434

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 511 NLTSINLSHNRIPSLNQVPRVSSKIEKLWMEENPL 615
           NL  ++LS+N+I +L        K+EKL +E+NPL
Sbjct: 315 NLRELDLSNNQIHALPDNFGRLDKLEKLNLEQNPL 349


>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 511 NLTSINLSHNRIPSLNQVPRVSSK--IEKLWMEENPLC 618
           +L  ++LS+N I + +++  + S   ++ LW+E NP+C
Sbjct: 266 SLMDLDLSYNIISNFSELEILGSLFLLQNLWLEGNPIC 303


>11_04_0447 -
           17829828-17829868,17829958-17830010,17830120-17830200,
           17830523-17830666,17830766-17830909,17830982-17831053,
           17831348-17831480,17831595-17831679
          Length = 250

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 478 PMEILNFFMKGNLTSINLSHNRI 546
           PME+L+  + GNLT +N++ N +
Sbjct: 205 PMEVLSLVLVGNLTELNVAGNNL 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,136,532
Number of Sequences: 37544
Number of extensions: 379756
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)