Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D04
         (1183 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    46   5e-05
AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 prote...    33   0.39 
AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal prote...    33   0.39 
AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protei...    33   0.39 
Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical pr...    29   8.5  
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   8.5  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   8.5  

>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
 Frame = +1

Query: 523 INLSHNRIPSLNQVPRVSS-KIEKLWMEENPLCETL-DASTYIKDILFKFPRLLELDGVK 696
           ++LSHN I +  ++ + +   +E+ + E NP+ E+    + YI  I   FPR   LDGV+
Sbjct: 275 LDLSHNHISTEKELEKFAGLPVERFFFEGNPVVESFTQRAAYISYIHQSFPRCNMLDGVE 334

Query: 697 LNHHRTYLPSIRNFVVP--AALHSNHAI----DEFLAIFFSYYDDP-FRHNRKYLANLYD 855
           +           +  +P  A  + N  I    ++F+  +F +YD P  +  R+ L N YD
Sbjct: 335 VQPLVVGPDLDIHDAMPFRAGYYPNPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYD 394

Query: 856 VEAK-FSIS 879
            +A  FS++
Sbjct: 395 ADASTFSLT 403


>AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 protein
           protein.
          Length = 679

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +1

Query: 511 NLTSINLSHNRIPSLNQVPRVSSKIEKLWMEEN------PLCETLDASTYIKDI-LFKFP 669
           NLT ++++ N++P L    +V  K++ LW+ EN       L ET D    IK +  +  P
Sbjct: 359 NLTVLDVASNKLPHLPFTVKVLYKLQALWLSENQTQSILKLSETRDDRKGIKVVTCYLLP 418

Query: 670 RLLELDG 690
           ++  +DG
Sbjct: 419 QVDAIDG 425


>AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal protein
           413, isoform a protein.
          Length = 679

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +1

Query: 511 NLTSINLSHNRIPSLNQVPRVSSKIEKLWMEEN------PLCETLDASTYIKDI-LFKFP 669
           NLT ++++ N++P L    +V  K++ LW+ EN       L ET D    IK +  +  P
Sbjct: 359 NLTVLDVASNKLPHLPFTVKVLYKLQALWLSENQTQSILKLSETRDDRKGIKVVTCYLLP 418

Query: 670 RLLELDG 690
           ++  +DG
Sbjct: 419 QVDAIDG 425


>AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protein
           413, isoform b protein.
          Length = 699

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +1

Query: 511 NLTSINLSHNRIPSLNQVPRVSSKIEKLWMEEN------PLCETLDASTYIKDI-LFKFP 669
           NLT ++++ N++P L    +V  K++ LW+ EN       L ET D    IK +  +  P
Sbjct: 359 NLTVLDVASNKLPHLPFTVKVLYKLQALWLSENQTQSILKLSETRDDRKGIKVVTCYLLP 418

Query: 670 RLLELDG 690
           ++  +DG
Sbjct: 419 QVDAIDG 425


>Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical
           protein T04F8.4 protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 20/76 (26%), Positives = 27/76 (35%)
 Frame = +1

Query: 688 GVKLNHHRTYLPSIRNFVVPAALHSNHAIDEFLAIFFSYYDDPFRHNRKYLANLYDVEAK 867
           G+KLNH    +   R       + S   I  F  +F +  D  +     Y      V A 
Sbjct: 84  GIKLNHGACNMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMYKEAARTVTAA 143

Query: 868 FSISTCFTSREQRDLP 915
             +S   T   Q DLP
Sbjct: 144 IDVSNLPTESVQSDLP 159


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 499 FMKGNLTSINLSHNRIPSLNQVPRVSSKIEKLWMEENPLCETLDASTYIKDILFKFPRLL 678
           F   NL  +NLS N+I  LN        +E L M  N L       T + D + K  RL 
Sbjct: 242 FKLRNLRKLNLSGNKIEKLNMTEGEWENLETLNMSHNQL-------TVLPDCVVKLTRLT 294

Query: 679 EL 684
           +L
Sbjct: 295 KL 296


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 499 FMKGNLTSINLSHNRIPSLNQVPRVSSKIEKLWMEENPLCETLDASTYIKDILFKFPRLL 678
           F   NL  +NLS N+I  LN        +E L M  N L       T + D + K  RL 
Sbjct: 242 FKLRNLRKLNLSGNKIEKLNMTEGEWENLETLNMSHNQL-------TVLPDCVVKLTRLT 294

Query: 679 EL 684
           +L
Sbjct: 295 KL 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,504,794
Number of Sequences: 27780
Number of extensions: 356498
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)