Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D04
         (1183 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   6.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   9.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 782 NSSIAWFECNAAGTTKFLID 723
           NSS AW +C A G+    ID
Sbjct: 44  NSSGAWLDCTATGSPPLNID 63


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 782 NSSIAWFECNAAGTTKFLID 723
           NSS AW +C A G+    ID
Sbjct: 44  NSSGAWLDCTATGSPPLNID 63


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 578 LLTLGTWFNDGILL*LRLMDVK 513
           +L LG+W  DG  + LR MD K
Sbjct: 168 VLKLGSWTYDGFKVDLRHMDEK 189


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 873 YQH--LFYFKRTERSSTLHEPHAEHYG 947
           Y+H  LFYF++ + +S  H+     YG
Sbjct: 8   YRHILLFYFRKGKNASQAHKKLCAVYG 34


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 578 LLTLGTWFNDGILL*LRLMDVK 513
           +L  G+W  DG  + LR MD K
Sbjct: 168 VLKFGSWTYDGFKVDLRHMDEK 189


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 511 NLTSINLSHNRIPSLNQV 564
           NL ++NL+ NR+  +N +
Sbjct: 172 NLQTLNLTENRLRDINDI 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,636
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)