Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_D03
         (1177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003...   100   2e-21
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524...   100   3e-21
03_06_0191 - 32228642-32228949,32229028-32230567                       30   3.1  
01_03_0196 - 13696056-13697448,13697676-13697713                       30   3.1  
01_03_0224 + 13940419-13941786                                         29   5.4  

>04_04_1127 -
           31098233-31098326,31099968-31100047,31100198-31100353,
           31100481-31100616,31101195-31101346,31102307-31102390,
           31102495-31102656
          Length = 287

 Score =  100 bits (240), Expect = 2e-21
 Identities = 65/203 (32%), Positives = 101/203 (49%)
 Frame = +1

Query: 277 LVAYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESL 456
           L+A  L    +SAIV+ +   ++     SN +  ++A  I+ HE +Y  ALK  H+  +L
Sbjct: 73  LLALYLSGDKESAIVS-LKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTL 131

Query: 457 ELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSVM 636
           +L A  +Q  + M+R D A KQLK++Q I++D TLTQLA AWL++  GG  I++A+    
Sbjct: 132 DLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQ 191

Query: 637 ELSEXXXXXXXXXXXXXXXXXXXXXMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXXK 816
           + +E                      ++EAE  L +A ++  +                K
Sbjct: 192 DFAE-KYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGK 250

Query: 817 XPEVSARYLAQLLDSHPQHPFVK 885
               S+RYL+QL  SHP H  VK
Sbjct: 251 P---SSRYLSQLKLSHPDHVLVK 270


>04_04_1355 +
           32851514-32851696,32852132-32852224,32852334-32852485,
           32852702-32852837,32852947-32853102,32853233-32853312,
           32853475-32853568
          Length = 297

 Score =  100 bits (239), Expect = 3e-21
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 1/211 (0%)
 Frame = +1

Query: 277 LVAYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAES 453
           L  YL   A  K + +  ++  +A     SN I  +VA T+  HE +Y  ALK  ++  +
Sbjct: 81  LTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGT 140

Query: 454 LELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQDAHYSV 633
           +EL A  +Q  L M+R D A KQL+++Q +++D TLTQLA AW++L+ GG  IQ+AH   
Sbjct: 141 MELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIF 200

Query: 634 MELSEXXXXXXXXXXXXXXXXXXXXXMWEEAEQQLTDAASRAPQXXXXXXXXXXXXXXXX 813
            +LSE                      +E+AE  L ++ ++  +                
Sbjct: 201 QDLSEKYPATCLILNGKALCLMHMGN-FEDAEGLLLESLNKDAKDAETLANLVVCSLNLG 259

Query: 814 KXPEVSARYLAQLLDSHPQHPFVKEYKXKTD 906
           K    ++RYL QL  +HP H  VK      D
Sbjct: 260 KS---ASRYLNQLKLAHPDHMLVKRMSSAED 287


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 340 VAKGTELSNEIFLIVAATIYYHEDNYEAALKILH----NAESLELRAFTLQCLLAMNRPD 507
           V + TE+++ +  +    +   + N++ AL +L     N ES+      L+CL+ +   D
Sbjct: 492 VVQDTEVASSVLTVFILALC-KQGNFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVD 550

Query: 508 LARKQLKLLQ 537
           LA + +K ++
Sbjct: 551 LAIEHIKSIR 560


>01_03_0196 - 13696056-13697448,13697676-13697713
          Length = 476

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 400 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 528
           YH  + ++++K LH+ + L + A  + C+++   P L ++  K
Sbjct: 16  YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58


>01_03_0224 + 13940419-13941786
          Length = 455

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 472 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 606
           T +CL+   RP LAR  L ++ D+   G   ++   W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,945,890
Number of Sequences: 37544
Number of extensions: 488293
Number of successful extensions: 1269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3596576368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)