Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C23
         (1140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    31   0.39 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    28   2.1  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   4.9  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   8.5  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 365 SMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNN 231
           S+S  T L  P+   +T S+  + +++  T  +F SSGL SGP N
Sbjct: 548 SVSSETTLVKPS---STSSYIDTTNNVLKTNSSFKSSGLTSGPRN 589


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 262 LNVIQVEAMSLQ--EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 411
           LN IQ   +SL+  +   +   V+ +    HVR++  F +  ++  LV+G+G
Sbjct: 556 LNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 509 EMILSSRMMRIKEKEQGSASRMRMKIMKKVNPRAKKR 619
           E +L+ R  R+KE+ +    +   K  KK   R KK+
Sbjct: 130 EALLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 395 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 276
           R NV T ++ N + +   + +PT +T TGS ++  S M +T
Sbjct: 57  RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 145 LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 291
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,639,273
Number of Sequences: 5004
Number of extensions: 68131
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 607615510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)