Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C22
         (1158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    29   0.93 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   5.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   8.7  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   8.7  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   8.7  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   8.7  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   8.7  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   8.7  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 407 LVEMLKKKNIKISIVIDQSGCNEPNDVFIKELLDAGAVIK 526
           ++E L  K+ K+ +++D    N+PN    KEL+D    +K
Sbjct: 434 MLEKLDSKSRKLIVILDPHIKNDPNYFVSKELIDYNYAVK 473


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 641  YVYITSKPKLVEPVSKEFKYMWLS-SKDLNYSQFDSKPINEDE 766
            YVY  S    ++PVS      W S  KD      D+K I E E
Sbjct: 1185 YVYRISPDYSIKPVSNRPYRSWFSRKKDSGQKHLDNKIITESE 1227


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 689 EFKYMWLSSKDLNYSQFDS 745
           EFK  W+ S +LNY + DS
Sbjct: 914 EFKRTWIHSVNLNYDRHDS 932


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 248 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 373
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 248 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 373
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 248 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 373
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 593 SLKLCRRSNRIYVAXXXXXXXXXXXLHQHLKVPL*RHHLVRCTRTDLLQLKS*YFSFSAF 414
           +L+L R+  ++Y+A              H +V   RH  +R  R DLL  +S Y +  +F
Sbjct: 59  ALELARKGAKVYLAGRNEEKYQKVMKQIHDEV---RHSKIRFLRLDLLDFESVYQAAESF 115


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 248 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 373
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,814,090
Number of Sequences: 5004
Number of extensions: 72442
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)