Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C22
         (1158 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical ...    29   6.2  
U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    29   8.2  

>AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical
           protein T05C3.6a protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
 Frame = +2

Query: 542 PYT-MQHKFCLIDDKVLMTGTLNWGNDRSSDHWNYVY----------ITSKPKLVEPVSK 688
           PY  + H    + +     GT NW    SSD+W Y             TSK KLV+  + 
Sbjct: 421 PYARVYHNKYFVTESAAYIGTSNW----SSDYWQYTAGIGIVIRADDFTSKSKLVQQFTS 476

Query: 689 EFKYMWLSSKDLNYSQF 739
            F+  W S+  +    F
Sbjct: 477 VFERDWSSTYTIPLKNF 493


>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
 Frame = +2

Query: 293 LHLNAYNCFDKLMSFIEAAKH-NIKVCMPGIHNVAIQGRLVEMLKKKNIKISIVIDQSGC 469
           LH  A  CF ++   +E+ +H N    +  I N+ I+     + KK  I   I + +  C
Sbjct: 421 LHYLAEKCFYEIRDLLESGQHFNASEFLRKIINL-IETSSCPIRKKHGISYLIELAEHQC 479

Query: 470 NEPNDVFIKELLDA--GAVIKYINTEPYTMQHKFCLIDDKVLMTGTLNWGNDRSSDHWNY 643
            +   + +  LLD     V++    + Y  ++K       + M   L+   +  + H+NY
Sbjct: 480 QKLTLLEVSILLDTLLNQVLELPEIDDYLSENK----SYNISMWCALDNLTNSENHHFNY 535

Query: 644 ---VYITSKPKLVEPVSKEFKYMWLSSKDLNYS 733
               ++  K  + +P S+E + + +  K  N S
Sbjct: 536 DKICWVAVKYLVTKPNSRETRAVEVLEKYFNSS 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,151
Number of Sequences: 27780
Number of extensions: 404592
Number of successful extensions: 879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3151206316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)