Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_C20
(1269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.084
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.34
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.59
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.084
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = -1
Query: 513 QNPPXFPXKXLFFPPXXXGXP-PPPXXFFXFXXPXPPPP---XXXPPPPP 376
++PP P + P P PPP P PPPP PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 1130 PPPPXXXXXPPPXXXXXXXXXXXXXPPPPP 1041
PPP PPP PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 1131 PPPPXXXXXPPPXXXXXXXXXXXXXPPPPP 1042
PP P PPP PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 453 PPPPXXFFXFXXPXPPPPXXXPPP 382
PPPP P PPPP PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP---PPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.34
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 452 PPPPXXFXFXGXPXPPPQXXXPPPPP 375
PPPP P PP PPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 452 PPPPXXFXFXGXPXPPPQXXXPPPPP 375
PPPP G PPQ PPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPP 364
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 459 GXPPPPXXFFXFXXPXPPPPXXXPPPP 379
G PPPP F P PPP PPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPP---PPPP 30
Score = 29.9 bits (64), Expect = 0.78
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 474 PPXXXGXPPPPXXFFXFXXPXPPPP 400
PP PPPP F P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +2
Query: 386 GGXXXGGGGXGXXKXKKXXGGGGXPXXXGGKKXXFXGKXGGF 511
GG GGG G + GGG P GG F G GGF
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGG-PGGFGGGLGGFGGGPGGF 261
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +2
Query: 380 GGGGXXXGGGGXGXXKXKKXXGGGGXPXXXGGKKXXFXGKXGGF 511
GG G G GG G GGG GG F G GGF
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP-GGFGGGPGGF 247
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -1
Query: 495 PXKXLFFPPXXXGXPPPPXXFFXFXXPXPPPPXXXPPPPP 376
P + PP PP P PPPP PPPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQ----MSAPTPPPPPMSVPPPP 1718
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 474 PPXXXGXPPPPXXFFXFXXPXPPPPXXXPPPP 379
PP PPPP P P P PPPP
Sbjct: 1708 PPPPMSVPPPPSA-----PPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Frame = -1
Query: 507 PPXFPXKXLFFPPXXXGXPPPPXXFFXFXXPXPPPPXXXPP--PPP 376
PP P PP PPP P PP PP PPP
Sbjct: 1690 PPVRPQSAA--PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 1131 PPPPXXXXXPPPXXXXXXXXXXXXXPPPPP 1042
PPPP PPP PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 376 GGGGGXXXWGGGXGXPKXKKXXGGGGXXXXXGGEKKXFXGKXGG 507
G GG +GGG G + G G GG + G GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 377 GGGGGXXXG-GGGXGXXKXKKXXGGGGXPXXXGGKKXXFXGKXG 505
GG GG G GG G + G GG GG+ G+ G
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,694
Number of Sequences: 5004
Number of extensions: 34776
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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