Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_C19
(1161 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 71 3e-13
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 46 1e-05
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 36 0.011
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 30 0.70
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 29 1.6
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 2.8
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 8.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 8.7
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 70.9 bits (166), Expect = 3e-13
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Frame = +2
Query: 353 LKAGTLLCKLANN-IHPNMXKKLNTSSMAFKCMEXINAFLEAAXQL-GVPAQETFQTVDL 526
L++G +LC++ + N+ K S+M F ME I+AF+ A Q+ VP+Q+ FQT DL
Sbjct: 31 LQSGVILCRICKEALGANIRYK--ESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDL 88
Query: 527 WEXQNLNSVVICLQSLGRKAGTY--GK-PSIGPKEAEKNVRNFSEEQLRA-GQGVISLQY 694
+E +N V+ + S R A GK +GPK AEK R FS +Q R +GV SLQY
Sbjct: 89 FERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQY 148
Query: 695 GS 700
GS
Sbjct: 149 GS 150
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 326 GAXDNFXXVLKAGTLLCKLANNIHPN-MXKKLNTSSMAFKCMEXINAFLEAAXQLGVPAQ 502
G F L+ G +L L P+ + K ++ + F+ + IN FL+ +G+P
Sbjct: 60 GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI 119
Query: 503 ETFQTVDLWEXQNLNSVVICLQSL 574
F+ D++E +NL V+ C+ +L
Sbjct: 120 FHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 335 DNFXXVLKAGTLLCKLANNIHPNMXKKLNTS-SMAFKCMEXINAFLEAAXQLGVPAQETF 511
D+F L G +LC+LA +P + ++ + +NAF +G+ F
Sbjct: 86 DDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPFRF 145
Query: 512 QTVDLWEXQNLNSVVICLQSL 574
+T DL N+ V+ CL +L
Sbjct: 146 ETKDLVRRFNIPKVIYCLHAL 166
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 29.9 bits (64), Expect = 0.70
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 839 NFYILNNSHSLQKSLYLDSNNVGKNDILKIKXESF 943
N+ L+N L + +Y DSN+ K D+L+I E +
Sbjct: 501 NYTTLSNKEFLIEGVYEDSNSRNKRDLLRINNEIY 535
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/89 (21%), Positives = 34/89 (38%)
Frame = +2
Query: 410 KKLNTSSMAFKCMEXINAFLEAAXQLGVPAQETFQTVDLWEXQNLNSVVICLQSLGRKAG 589
++ +S A E + AF+E A Q G+P E W+ + + +L +
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177
Query: 590 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 676
Y + +NVR + G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 812 LRSI*HACNKPFKCARLDSFTCVSCY 735
LRS ACN K R DSF C C+
Sbjct: 55 LRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 713 WRPYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQ 585
W YLN +E +PD P ++ + +L V+ T R ++
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYK 154
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 942 KDSSFIFKMSFLPTLLESKYRL 877
K+ S+++K+S +P+LLES +L
Sbjct: 1581 KERSYLYKVSNIPSLLESAAKL 1602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,849,515
Number of Sequences: 5004
Number of extensions: 71001
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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