Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C19
         (1161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500           29   5.3  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    29   7.0  

>03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500
          Length = 359

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 566 QSLGRKAGTYGK-PSIGPKEAEKNVRNFSEEQLRAGQGVIS 685
           +S GRK   +   P+ G   AE +VRN S  QLR   G+++
Sbjct: 37  ESFGRKGLRFAADPATGAPTAELSVRNGSSLQLRLADGLVT 77


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +1

Query: 454 YQRFPRSRKXVGCTGTGNFSNCRPVGEXESQLRRDLLAVTGQKGWNLREAVNRTERS*EE 633
           YQR  R+RK    +GTGN ++  PV    + +    L+  G+ G   R A++ TE+  E 
Sbjct: 23  YQREWRARKKAKLSGTGNVTSDSPV--LATTISATELSEGGEVG---RSAISSTEKKEER 77

Query: 634 RAK 642
             K
Sbjct: 78  NRK 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,141,873
Number of Sequences: 37544
Number of extensions: 508569
Number of successful extensions: 1237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)