Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_C18
(1042 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O44226 Cluster: Elongin B; n=14; Coelomata|Rep: Elongin... 131 3e-29
UniRef50_Q15370 Cluster: Transcription elongation factor B polyp... 98 3e-19
UniRef50_Q5DDQ4 Cluster: SJCHGC06119 protein; n=1; Schistosoma j... 97 9e-19
UniRef50_A6NGH1 Cluster: Uncharacterized protein ENSP00000333957... 93 1e-17
UniRef50_UPI00006D1171 Cluster: PREDICTED: transcription elongat... 90 1e-16
UniRef50_UPI0000507768 Cluster: PREDICTED: similar to transcript... 81 5e-14
UniRef50_UPI0000E48F2C Cluster: PREDICTED: hypothetical protein;... 80 8e-14
UniRef50_Q9D7T5 Cluster: Adult male stomach cDNA, RIKEN full-len... 66 1e-09
UniRef50_UPI0000D9EFB7 Cluster: PREDICTED: similar to elongin B ... 65 3e-09
UniRef50_Q9XWU4 Cluster: Putative uncharacterized protein elb-1;... 50 7e-05
UniRef50_UPI0000DA1C63 Cluster: PREDICTED: similar to transcript... 36 1.3
>UniRef50_O44226 Cluster: Elongin B; n=14; Coelomata|Rep: Elongin B
- Drosophila melanogaster (Fruit fly)
Length = 118
Score = 131 bits (316), Expect = 3e-29
Identities = 61/117 (52%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M VF M+RR+K +FT A+ T V L +M+EG LKV P Q L+N+ + +ME L +
Sbjct: 1 MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDNDVMEDDSTLQD 60
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQE-TNGQEQM 522
+G+T +TAKA PA +GL R E G+FE L++TPYS+PPDLP+VMK+QE +NGQEQ+
Sbjct: 61 YGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPDLPEVMKNQEASNGQEQV 117
>UniRef50_Q15370 Cluster: Transcription elongation factor B
polypeptide 2; n=20; Mammalia|Rep: Transcription
elongation factor B polypeptide 2 - Homo sapiens (Human)
Length = 118
Score = 98.3 bits (234), Expect = 3e-19
Identities = 51/110 (46%), Positives = 71/110 (64%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M VF M+RR K +FT A+ ++ V L +++EG LK P Q L+ K QL++ + L E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQET 504
G TS TA+ PA +GLA R + FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRAD-DTFEALCIEPFSSPPELPDVMKPQDS 108
>UniRef50_Q5DDQ4 Cluster: SJCHGC06119 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06119 protein - Schistosoma
japonicum (Blood fluke)
Length = 121
Score = 96.7 bits (230), Expect = 9e-19
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +1
Query: 190 MLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAEFGLTS 369
++RRKK + A+ T+ VL + +M+EG +KV P QML ++ M+ + L+ + L S
Sbjct: 2 VVRRKKTTIHLNARETSLVLEVKKMIEGIIKVKPEDQMLLKHQTE-MDDEKTLSYYNLNS 60
Query: 370 NTAKAHCPAPIGLALRKEXGE-FEALELTPYSSPPDLPDVMKSQE 501
TA+AH PA +GL LR E FE L++TPYS+PP+LP+VM+SQE
Sbjct: 61 QTARAHTPATLGLCLRDPTTEKFETLDITPYSNPPELPEVMRSQE 105
>UniRef50_A6NGH1 Cluster: Uncharacterized protein ENSP00000333957;
n=13; Eumetazoa|Rep: Uncharacterized protein
ENSP00000333957 - Homo sapiens (Human)
Length = 118
Score = 92.7 bits (220), Expect = 1e-17
Identities = 50/110 (45%), Positives = 69/110 (62%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M VF ++RR K +FT A+ ++ V L +++EG LK P Q L+ K QL++ + L E
Sbjct: 1 MDVFLVIRRHKTTIFTDAKESSTVFELKRVVEGILKRPPDEQRLY-KDYQLLDDGKTLGE 59
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQET 504
G TS TA+ PA +GLA R FEAL + P+SSPP+L DVMK QE+
Sbjct: 60 CGFTSQTARPQAPATVGLAFRAHDA-FEALCIEPFSSPPELLDVMKPQES 108
>UniRef50_UPI00006D1171 Cluster: PREDICTED: transcription elongation
factor B (SIII), polypeptide 2 (18kDa, elongin B); n=4;
Eutheria|Rep: PREDICTED: transcription elongation factor
B (SIII), polypeptide 2 (18kDa, elongin B) - Macaca
mulatta
Length = 118
Score = 89.8 bits (213), Expect = 1e-16
Identities = 48/110 (43%), Positives = 69/110 (62%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M +F +RR K +FT A+ ++ V L +++EG LK P Q L+ K QL++ + L E
Sbjct: 1 MDLFLRVRRHKTAIFTDAEESSTVFELKRLVEGLLKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQET 504
G TS TA+ PA +GLA R + FEAL + P+SSPP+L DVMK Q++
Sbjct: 60 CGFTSQTARPLAPASVGLAFRAD-DTFEALCIEPFSSPPELLDVMKPQDS 108
>UniRef50_UPI0000507768 Cluster: PREDICTED: similar to transcription
elongation factor B (SIII), polypeptide 2; n=4; Rattus
norvegicus|Rep: PREDICTED: similar to transcription
elongation factor B (SIII), polypeptide 2 - Rattus
norvegicus
Length = 250
Score = 81.0 bits (191), Expect = 5e-14
Identities = 45/107 (42%), Positives = 66/107 (61%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M VF M+RRKK +F AQ ++ VL L ++++G LK P Q+LF K QL++ + L +
Sbjct: 1 MEVFLMIRRKKTTIFAEAQESSTVLELKRIVQGILKRPPEEQLLF-KDDQLLDESKTLRD 59
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKS 495
G TS AKA PA + L R++ E +++ PYS+P LP VMK+
Sbjct: 60 CGFTSQIAKAQDPATVALVFREDAS--EGVQIHPYSTPL-LPSVMKT 103
Score = 71.7 bits (168), Expect = 3e-11
Identities = 39/98 (39%), Positives = 59/98 (60%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M VF M+RRKK +F AQ ++ VL L ++++G LK P Q+LF K +QL+E + L +
Sbjct: 141 MEVFLMIRRKKTTIFAEAQESSTVLELKRIVQGFLKKPPKDQLLF-KDNQLLEERKTLRD 199
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSP 468
G+T AK PA + L R++ F+ L +P+S P
Sbjct: 200 CGITGRIAKPEDPAILTLEFRED--AFQLLHASPFSCP 235
>UniRef50_UPI0000E48F2C Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 133
Score = 80.2 bits (189), Expect = 8e-14
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
M VF M++R+K +FT A+ T V L +++EG K P Q L+ K ++ + L +
Sbjct: 1 MDVFLMIKRQKTTIFTDAKETNTVFELKRIIEGITKRGPEDQQLY-KDGDTLDDTKTLGD 59
Query: 355 FGLTSNTAKAHCPAPIGLALRK-EXGEFEALELTPYSSP 468
GLTSNTAKA PA +GLA R+ E +FE L +TP P
Sbjct: 60 CGLTSNTAKAQAPAMLGLAFRECEGADFEQLNITPLLQP 98
>UniRef50_Q9D7T5 Cluster: Adult male stomach cDNA, RIKEN full-length
enriched library, clone:2210409E12 product:similar to
RNA POLYMERASE II TRANSCRIPTION FACTOR SIII P18 SUBUNIT;
n=2; Mus musculus|Rep: Adult male stomach cDNA, RIKEN
full-length enriched library, clone:2210409E12
product:similar to RNA POLYMERASE II TRANSCRIPTION
FACTOR SIII P18 SUBUNIT - Mus musculus (Mouse)
Length = 100
Score = 66.5 bits (155), Expect = 1e-09
Identities = 36/94 (38%), Positives = 55/94 (58%)
Frame = +1
Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
+ VF ++R KK +FT A+ ++ V L +++EG +K P Q+LF K +QL++ + L E
Sbjct: 9 LFVFLVIRHKKTTIFTDAKESSTVWELKRIIEGIMKRPPEEQLLF-KDNQLLDEMKTLRE 67
Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTP 456
G T A+ PA +GLA R FE LE+ P
Sbjct: 68 CGFTFQVARPETPATVGLAFR-TGDVFEGLEIHP 100
>UniRef50_UPI0000D9EFB7 Cluster: PREDICTED: similar to elongin B
isoform b; n=1; Macaca mulatta|Rep: PREDICTED: similar
to elongin B isoform b - Macaca mulatta
Length = 152
Score = 64.9 bits (151), Expect = 3e-09
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = +1
Query: 292 PSQMLFNKXSQLMEAXQPLAEFGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPP 471
P + QL++ + L E G TS TA+ PA +GLA R + FEAL + P+SSPP
Sbjct: 5 PRSCFSPQDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPP 63
Query: 472 DLPDVMKSQET 504
+LPDVMK Q++
Sbjct: 64 ELPDVMKPQDS 74
>UniRef50_Q9XWU4 Cluster: Putative uncharacterized protein elb-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein elb-1 - Caenorhabditis elegans
Length = 118
Score = 50.4 bits (115), Expect = 7e-05
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Frame = +1
Query: 181 VFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKX------SQLMEAXQ 342
+F +RR + ++ A+ + V+ L ML G + P + M K SQL+
Sbjct: 6 LFFEVRRNRSHIYLDAEESHSVMELKLMLAGITR-DPVNHMELWKLDEDGNKSQLLHDTA 64
Query: 343 PLAEFGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQE 501
L++ G +S AKA CPA +GL L E L ++ S+ P +PD M+ ++
Sbjct: 65 TLSDAGFSSTNAKAQCPAALGLRLTNAE---EHLTISDVSTAPPIPDTMRQEQ 114
>UniRef50_UPI0000DA1C63 Cluster: PREDICTED: similar to transcription
elongation factor B (SIII), polypeptide 2; n=2;
Eutheria|Rep: PREDICTED: similar to transcription
elongation factor B (SIII), polypeptide 2 - Rattus
norvegicus
Length = 82
Score = 36.3 bits (80), Expect = 1.3
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 433 FEALELTPYSSPPDLPDVMKSQETNG 510
FEAL P+SSP +LPDVM+ Q++ G
Sbjct: 44 FEALNSEPFSSPLELPDVMRLQDSGG 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,826,857
Number of Sequences: 1657284
Number of extensions: 13800527
Number of successful extensions: 24889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24868
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 100021575115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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