Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C18
         (1042 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2819|AAG22163.1|  118|Drosophila melanogaster CG4204-PA...   131   2e-30
AB007692-1|BAA24286.1|  118|Drosophila melanogaster Elongin B pr...   131   2e-30

>AE014297-2819|AAG22163.1|  118|Drosophila melanogaster CG4204-PA
           protein.
          Length = 118

 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/117 (52%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
 Frame = +1

Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
           M VF M+RR+K  +FT A+  T V  L +M+EG LKV P  Q L+N+ + +ME    L +
Sbjct: 1   MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDNDVMEDDSTLQD 60

Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQE-TNGQEQM 522
           +G+T +TAKA  PA +GL  R E G+FE L++TPYS+PPDLP+VMK+QE +NGQEQ+
Sbjct: 61  YGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPDLPEVMKNQEASNGQEQV 117


>AB007692-1|BAA24286.1|  118|Drosophila melanogaster Elongin B
           protein.
          Length = 118

 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/117 (52%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
 Frame = +1

Query: 175 MXVFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKXSQLMEAXQPLAE 354
           M VF M+RR+K  +FT A+  T V  L +M+EG LKV P  Q L+N+ + +ME    L +
Sbjct: 1   MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDNDVMEDDSTLQD 60

Query: 355 FGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQE-TNGQEQM 522
           +G+T +TAKA  PA +GL  R E G+FE L++TPYS+PPDLP+VMK+QE +NGQEQ+
Sbjct: 61  YGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPDLPEVMKNQEASNGQEQV 117


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,657,494
Number of Sequences: 53049
Number of extensions: 649141
Number of successful extensions: 1268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 24,988,368
effective HSP length: 86
effective length of database: 20,426,154
effective search space used: 5310800040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)