Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C18
         (1042 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical...    50   2e-06
AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymeras...    50   2e-06
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    28   9.6  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    28   9.6  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    28   9.6  

>AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical
           protein Y41C4A.10 protein.
          Length = 118

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
 Frame = +1

Query: 181 VFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKX------SQLMEAXQ 342
           +F  +RR +  ++  A+ +  V+ L  ML G  +  P + M   K       SQL+    
Sbjct: 6   LFFEVRRNRSHIYLDAEESHSVMELKLMLAGITR-DPVNHMELWKLDEDGNKSQLLHDTA 64

Query: 343 PLAEFGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQE 501
            L++ G +S  AKA CPA +GL L       E L ++  S+ P +PD M+ ++
Sbjct: 65  TLSDAGFSSTNAKAQCPAALGLRLTNAE---EHLTISDVSTAPPIPDTMRQEQ 114


>AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymerase
           II transcriptionfactor SIII p18 subunit protein.
          Length = 118

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
 Frame = +1

Query: 181 VFXMLRRKKLXVFTXAQATTPVLALXQMLEGXLKVSPPSQMLFNKX------SQLMEAXQ 342
           +F  +RR +  ++  A+ +  V+ L  ML G  +  P + M   K       SQL+    
Sbjct: 6   LFFEVRRNRSHIYLDAEESHSVMELKLMLAGITR-DPVNHMELWKLDEDGNKSQLLHDTA 64

Query: 343 PLAEFGLTSNTAKAHCPAPIGLALRKEXGEFEALELTPYSSPPDLPDVMKSQE 501
            L++ G +S  AKA CPA +GL L       E L ++  S+ P +PD M+ ++
Sbjct: 65  TLSDAGFSSTNAKAQCPAALGLRLTNAE---EHLTISDVSTAPPIPDTMRQEQ 114


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 592 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 452
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 592 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 452
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 592 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 452
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 592 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HRASRGVKNTG 452
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,164
Number of Sequences: 27780
Number of extensions: 332938
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2762030832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)