Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C17
         (1198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.65 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 521 PKKNPPXXXXXGFFLXGXXXPPPPPPGXXKXXK 423
           P  NPP       F      PPPPPPG  K  K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 462 PPPPPPGXXKXXKXIFXXPPPPP 394
           PPPPPPG     +     PPPPP
Sbjct: 11  PPPPPPGFEPPSQP----PPPPP 29



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 462 PPPPPPGXXKXXKXIFXXPPPPP 394
           PPPPPP   +        PPPPP
Sbjct: 10  PPPPPPPGFEPPSQ--PPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect(2) = 0.65
 Identities = 12/43 (27%), Positives = 12/43 (27%)
 Frame = -2

Query: 573 PFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPP 445
           P  P    P        P   P             K PPPPPP
Sbjct: 274 PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316



 Score = 24.2 bits (50), Expect(2) = 0.65
 Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
 Frame = -2

Query: 468 KXPPPPPPGXXKXXKXIF-------XXPPPPP 394
           + PPPPPP      K            PPPPP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/70 (27%), Positives = 21/70 (30%)
 Frame = -3

Query: 611 PPXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPGXXK 432
           PP P       P   P    P      G  P   PP     G    G   PPPPPP    
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP-----GVAGAGPPPPPPPPPAVSA 787

Query: 431 XXKXFFXXPP 402
               ++   P
Sbjct: 788 GGSRYYAPAP 797



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 462 PPPPPPGXXKXXKXIFXXPPPPP 394
           PPPPPPG           PPPPP
Sbjct: 763 PPPPPPGVAGAGPP----PPPPP 781



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 468 KXPPPPPPGXXKXXKXIFXXPPPPP 394
           K PPPPPP            P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.151    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,061
Number of Sequences: 5004
Number of extensions: 26810
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)