Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_C17
(1198 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 37 0.025
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 37 0.025
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 36 0.057
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.057
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.057
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 33 0.53
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.53
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.53
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.53
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 32 0.92
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 32 0.92
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.92
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.92
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.92
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 2.1
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 30 2.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 3.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 3.7
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.9
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.5
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 6.5
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 29 6.5
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 26 6.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 8.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.1 bits (82), Expect = 0.025
Identities = 24/73 (32%), Positives = 27/73 (36%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXK 433
PP PP PP PP P+ PP G + PPPPPPG
Sbjct: 261 PPVPP------PPPSVTPMPPPMPPTPGMTPRPPPPPSS--GMW----PPPPPPPPGRTP 308
Query: 432 XXKXIFXXPPPPP 394
+ PPPPP
Sbjct: 309 GPPGMPGMPPPPP 321
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/74 (32%), Positives = 25/74 (33%)
Frame = -3
Query: 617 GXPPXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPGX 438
G P P PP P F P G G P PP G G PPPPP
Sbjct: 305 GRTPGPPGMPGMPPPPPPSRFGP---PGMGGMPPPPPP-----GMRYPGGMPPPPPPRYP 356
Query: 437 XKXXKXFFXXPPPP 396
+ PPPP
Sbjct: 357 SAGPGMY--PPPPP 368
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXK 433
PP PP P P PP G P PP PPPPPP
Sbjct: 275 PPMPP------TPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM--PPPPPPSRF- 325
Query: 432 XXKXIFXXPPPPP 394
+ PPPPP
Sbjct: 326 GPPGMGGMPPPPP 338
Score = 29.5 bits (63), Expect = 4.9
Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPP--PGX 439
PP PP F P PP P PP G PPPPP P
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG----PGMYPPPPPSRPPA 373
Query: 438 XKXXKXIFXXPPPP 397
+ PPPP
Sbjct: 374 PPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.1 bits (82), Expect = 0.025
Identities = 24/73 (32%), Positives = 27/73 (36%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXK 433
PP PP PP PP P+ PP G + PPPPPPG
Sbjct: 271 PPVPP------PPPSVTPMPPPMPPTPGMTPRPPPPPSS--GMW----PPPPPPPPGRTP 318
Query: 432 XXKXIFXXPPPPP 394
+ PPPPP
Sbjct: 319 GPPGMPGMPPPPP 331
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/74 (32%), Positives = 25/74 (33%)
Frame = -3
Query: 617 GXPPXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPGX 438
G P P PP P F P G G P PP G G PPPPP
Sbjct: 315 GRTPGPPGMPGMPPPPPPSRFGP---PGMGGMPPPPPP-----GMRYPGGMPPPPPPRYP 366
Query: 437 XKXXKXFFXXPPPP 396
+ PPPP
Sbjct: 367 SAGPGMY--PPPPP 378
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXK 433
PP PP P P PP G P PP PPPPPP
Sbjct: 285 PPMPP------TPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM--PPPPPPSRF- 335
Query: 432 XXKXIFXXPPPPP 394
+ PPPPP
Sbjct: 336 GPPGMGGMPPPPP 348
Score = 29.5 bits (63), Expect = 4.9
Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPP--PGX 439
PP PP F P PP P PP G PPPPP P
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG----PGMYPPPPPSRPPA 383
Query: 438 XKXXKXIFXXPPPP 397
+ PPPP
Sbjct: 384 PPSGHGMIPPPPPP 397
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 35.9 bits (79), Expect = 0.057
Identities = 25/72 (34%), Positives = 26/72 (36%)
Frame = -2
Query: 609 PXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKX 430
P P FF PP F PP G P PP G PPPP G
Sbjct: 59 PKPSFFIP---PPVPNGFIPPPPGPGGIPP---PPPMFAGGI------PPPPPMMGGIPP 106
Query: 429 XKXIFXXPPPPP 394
+F PPPPP
Sbjct: 107 PPPMFGAPPPPP 118
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.057
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -2
Query: 540 GGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
GG P PP GF PPPPPP + PPPPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFM----PPPPPPPPMPGDLSSLLAAAPPPPP 698
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.057
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -2
Query: 540 GGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
GG P PP GF PPPPPP + PPPPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFM----PPPPPPPPMPGDLSSLLAAAPPPPP 698
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 32.7 bits (71), Expect = 0.53
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXK 433
PP PP P PP P PP PPPP PG
Sbjct: 472 PPGPPSSLLPLINTNAPP-PPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAP 530
Query: 432 XXKXIFXXPPPPP 394
PPPPP
Sbjct: 531 LSTGAPTPPPPPP 543
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.53
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFX--PXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGX 439
PP PP PP P PP GG P PP G PPPPPPG
Sbjct: 743 PPPPP---PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG-------PPPPPPPGM 792
Query: 438 XKXXKXIFXXPPPP 397
+ PP
Sbjct: 793 FAPMAPVIPDYLPP 806
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 573 PFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
P P PP GG PP G PPPPPPG I PPPPP
Sbjct: 713 PPPPPGLPPITGGP-------PPPPPPGGLPPITGGPPPPPPPGGLPP---ISGGPPPPP 762
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 509 PPXXXXXGFFLXGXXXPPPPPPGXXKXXKXFFXXPPPP 396
PP G PPPPPPG PPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.1 bits (62), Expect = 6.5
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = -3
Query: 617 GXPPXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPGX 438
G PP P PP+ P GG PP G PPPPPP
Sbjct: 725 GPPPPPP--PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG------GCPPPPPPPP 776
Query: 437 XKXXKXFFXXPPPP 396
K PPPP
Sbjct: 777 PGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.53
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFX--PXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGX 439
PP PP PP P PP GG P PP G PPPPPPG
Sbjct: 743 PPPPP---PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG-------PPPPPPPGM 792
Query: 438 XKXXKXIFXXPPPP 397
+ PP
Sbjct: 793 FAPMAPVIPDYLPP 806
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 573 PFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
P P PP GG PP G PPPPPPG I PPPPP
Sbjct: 713 PPPPPGLPPITGGP-------PPPPPPGGLPPITGGPPPPPPPGGLPP---ISGGPPPPP 762
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 509 PPXXXXXGFFLXGXXXPPPPPPGXXKXXKXFFXXPPPP 396
PP G PPPPPPG PPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.1 bits (62), Expect = 6.5
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = -3
Query: 617 GXPPXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPGX 438
G PP P PP+ P GG PP G PPPPPP
Sbjct: 725 GPPPPPP--PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG------GCPPPPPPPP 776
Query: 437 XKXXKXFFXXPPPP 396
K PPPP
Sbjct: 777 PGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.53
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFX--PXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGX 439
PP PP PP P PP GG P PP G PPPPPPG
Sbjct: 326 PPPPP---PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG-------PPPPPPPGM 375
Query: 438 XKXXKXIFXXPPPP 397
+ PP
Sbjct: 376 FAPMAPVIPDYLPP 389
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 573 PFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
P P PP GG PP G PPPPPPG I PPPPP
Sbjct: 296 PPPPPGLPPITGGP-------PPPPPPGGLPPITGGPPPPPPPGGLPP---ISGGPPPPP 345
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 509 PPXXXXXGFFLXGXXXPPPPPPGXXKXXKXFFXXPPPP 396
PP G PPPPPPG PPPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 29.1 bits (62), Expect = 6.5
Identities = 23/74 (31%), Positives = 24/74 (32%)
Frame = -3
Query: 617 GXPPXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPGX 438
G PP P PP+ P GG PP G PPPPPP
Sbjct: 308 GPPPPPP--PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG------GCPPPPPPPP 359
Query: 437 XKXXKXFFXXPPPP 396
K PPPP
Sbjct: 360 PGGFKGGPPPPPPP 373
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = -2
Query: 573 PFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
P P + P P PP G PPPPPP + PPPP
Sbjct: 593 PQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPP 652
Score = 28.7 bits (61), Expect = 8.6
Identities = 22/80 (27%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPP---- 445
PP P P P PP G P + P G PPPPP
Sbjct: 558 PPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 617
Query: 444 ---GXXKXXKXIFXXPPPPP 394
G PPPPP
Sbjct: 618 QSFGMAPISSAAPPPPPPPP 637
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = -2
Query: 573 PFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
P P + P P PP G PPPPPP + PPPP
Sbjct: 419 PQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPP 478
Score = 28.7 bits (61), Expect = 8.6
Identities = 22/80 (27%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPP---- 445
PP P P P PP G P + P G PPPPP
Sbjct: 384 PPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 443
Query: 444 ---GXXKXXKXIFXXPPPPP 394
G PPPPP
Sbjct: 444 QSFGMAPISSAAPPPPPPPP 463
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = -2
Query: 576 PPFXPXFXPPFXGGXXXXPKK---KPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXP 406
PP P PP G P PP PPPPP G P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 405 PPPP 394
PPPP
Sbjct: 299 PPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = -2
Query: 576 PPFXPXFXPPFXGGXXXXPKK---KPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXP 406
PP P PP G P PP PPPPP G P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 405 PPPP 394
PPPP
Sbjct: 320 PPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Frame = -2
Query: 576 PPFXPXFXPPFXGGXXXXPKK---KPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXP 406
PP P PP G P PP PPPPP G P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 405 PPPP 394
PPPP
Sbjct: 305 PPPP 308
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = -2
Query: 522 PKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXI-FXXPPPPP 394
P PP PPPPPP K + PPPPP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPP 1381
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 477 KXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
K PPPPPP + PPPPP
Sbjct: 64 KATPPPPPPPPPLISILQQAPPPPPPPP 91
Score = 28.7 bits (61), Expect = 8.6
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -2
Query: 522 PKKKPPXXXXXGFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
P PP + PPPPPP K PPPPP
Sbjct: 67 PPPPPPPPPLISILQQAPPPPPPPPPPTLK-------APPPPP 102
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 3.7
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +2
Query: 446 GGGGGGXFXXLKKNPXXXXXGGFFLGXXXXPPXKGGKKXGXKGGXXXXKKXGGXGG 613
GGGGGG F P GG+ G GG G G GG GG
Sbjct: 320 GGGGGGDF------PAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGG 369
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 462 PPPPPPGXXKXXKXIFXXPPPPP 394
PPPPPP + PPPPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPP 583
Score = 28.7 bits (61), Expect = 8.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -3
Query: 575 PLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPG 441
P+ P PL G P PP + G PPPPPPG
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPP------MLGGPPPPPPPPG 597
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPP--PPPP 445
PP PP F PP P PP G PP F+ PP PPPP
Sbjct: 305 PPPPPHFMGRGMPP--PFMPPPPHFGMGPPRGFMPPPHP---MMFRGGPYPPFFPPPP 357
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = -2
Query: 612 PPXPPFFFXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPP--PPPP 445
PP PP F PP P PP G PP F+ PP PPPP
Sbjct: 305 PPPPPHFMGRGMPP--PFMPPPPHFGMGPPRGFMPPPHP---MMFRGGPYPPFFPPPP 357
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 462 PPPPPPGXXKXXKXIFXXPPPPP 394
PPPPPP PPPPP
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPP 144
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 6.5
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = -2
Query: 612 PPXPPFF-FXXXXPPFXPXFXPPFXGGXXXXPKKKPPXXXXXGFFFKXXKXPPPPPP-GX 439
P PP F P PP P + P + K PPPPPP
Sbjct: 445 PSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPP 504
Query: 438 XKXXKXIFXXPPPPP 394
+ PPPPP
Sbjct: 505 IATPSSVPPPPPPPP 519
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 29.1 bits (62), Expect = 6.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 489 GFFFKXXKXPPPPPPGXXKXXKXIFXXPPPPP 394
G ++K PPPPPG PPPPP
Sbjct: 2268 GSYYKSPNLIPPPPPGYMHTPP---LPPPPPP 2296
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 26.2 bits (55), Expect(2) = 6.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 459 PPPPPGXXKXXKXIFXXPPPPP 394
PPPPP PPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPP 815
Score = 21.0 bits (42), Expect(2) = 6.9
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 462 PPPPPP 445
PPPPPP
Sbjct: 766 PPPPPP 771
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 26.2 bits (55), Expect(2) = 6.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 459 PPPPPGXXKXXKXIFXXPPPPP 394
PPPPP PPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPP 815
Score = 21.0 bits (42), Expect(2) = 6.9
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 462 PPPPPP 445
PPPPPP
Sbjct: 766 PPPPPP 771
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -3
Query: 608 PXPXFFXKXXPPLXPXXFXPLXGGGXGXXPKKNPPXXXXXGFFLXGXXXPPPPPPG 441
P P F P P + P GG G PP GF PPP PG
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGF-----GPPPPGGPG 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.151 0.508
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,751
Number of Sequences: 27780
Number of extensions: 318021
Number of successful extensions: 2636
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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