Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C14
         (1160 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    27   0.36 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   1.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   7.7  

>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 637 KMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFNLPDA 774
           K D+   +++L  D  L +N ++ +   G T + +GEE+K  LPDA
Sbjct: 27  KYDNIDLEEILKSDRLL-KNYFNCLMERG-TCSPDGEELKKALPDA 70


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 637 KMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFNLPDA 774
           K D+   +++L  D  L EN  + +       T +GEE+K  LPDA
Sbjct: 26  KYDNVNLKEILQSDR-LTENYVNCLLE-KKPCTPDGEELKRVLPDA 69


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 293 LWVGPRGFCSLCSKSRTWFQSSRRAC 216
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 293 LWVGPRGFCSLCSKSRTWFQSSRRAC 216
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 293 LWVGPRGFCSLCSKSRTWFQSSRRAC 216
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 293 LWVGPRGFCSLCSKSRTWFQSSRRAC 216
           L+V P  F S C    TWF    + C
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFDDQHC 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,181
Number of Sequences: 336
Number of extensions: 4756
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33815816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)