Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C14
         (1160 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF439153-1|AAL31641.1|  485|Homo sapiens Ro/SSA1 related protein...    31   7.9  

>AF439153-1|AAL31641.1|  485|Homo sapiens Ro/SSA1 related protein
           FLJ10369 protein.
          Length = 485

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 21/84 (25%), Positives = 36/84 (42%)
 Frame = +2

Query: 38  PLSFLSVSQQTHCNCSQVWQIXIPRPKALEXVNHNRVAIPLVV*RKAAGTIAVPTSSSRD 217
           P+ ++    Q   N S+ W +  P P +LE     RV     + +  AG + +   ++  
Sbjct: 255 PVRWMLQDIQEVLNRSKSWSLQQPEPISLELKTDCRVLGLREILKTYAGDVRLDPDTAYS 314

Query: 218 KLSVTTGTKFVTLNKENRNLADQP 289
           +L V+   K V     N+ L D P
Sbjct: 315 RLIVSEDRKRVHYGDTNQKLPDNP 338


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,601,120
Number of Sequences: 237096
Number of extensions: 3038663
Number of successful extensions: 9705
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9705
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16183591620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)