Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C12
         (1214 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends l...    32   1.8  
AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP mot...    32   1.8  
AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends p...    32   1.8  
AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,...    32   1.8  
AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,...    32   1.8  
AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,...    32   1.8  

>AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends long
            isoform protein.
          Length = 5554

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 731  RGXTPXGXXKYQGFP-----PEXPXVXSLVPXPAVNGIXVRL-SPLGKXGPFSNXPRGRX 892
            RG  P G  K  GFP        P V SLV  P  NG+  RL  P+    P +   +GR 
Sbjct: 4285 RGRQPRGAKKVGGFPLNSVTAAPPGVDSLVVQPGDNGVQTRLRKPV--TAPVTRGRKGRP 4342

Query: 893  P 895
            P
Sbjct: 4343 P 4343


>AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP motif
            protein long isoformprotein.
          Length = 5533

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 731  RGXTPXGXXKYQGFP-----PEXPXVXSLVPXPAVNGIXVRL-SPLGKXGPFSNXPRGRX 892
            RG  P G  K  GFP        P V SLV  P  NG+  RL  P+    P +   +GR 
Sbjct: 4291 RGRQPRGAKKVGGFPLNSVTAAPPGVDSLVVQPGDNGVQTRLRKPV--TAPVTRGRKGRP 4348

Query: 893  P 895
            P
Sbjct: 4349 P 4349


>AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends
            protein.
          Length = 5476

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 731  RGXTPXGXXKYQGFP-----PEXPXVXSLVPXPAVNGIXVRL-SPLGKXGPFSNXPRGRX 892
            RG  P G  K  GFP        P V SLV  P  NG+  RL  P+    P +   +GR 
Sbjct: 4234 RGRQPRGAKKVGGFPLNSVTAAPPGVDSLVVQPGDNGVQTRLRKPV--TAPVTRGRKGRP 4291

Query: 893  P 895
            P
Sbjct: 4292 P 4292


>AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,
            isoform C protein.
          Length = 5476

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 731  RGXTPXGXXKYQGFP-----PEXPXVXSLVPXPAVNGIXVRL-SPLGKXGPFSNXPRGRX 892
            RG  P G  K  GFP        P V SLV  P  NG+  RL  P+    P +   +GR 
Sbjct: 4234 RGRQPRGAKKVGGFPLNSVTAAPPGVDSLVVQPGDNGVQTRLRKPV--TAPVTRGRKGRP 4291

Query: 893  P 895
            P
Sbjct: 4292 P 4292


>AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,
            isoform B protein.
          Length = 5533

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 731  RGXTPXGXXKYQGFP-----PEXPXVXSLVPXPAVNGIXVRL-SPLGKXGPFSNXPRGRX 892
            RG  P G  K  GFP        P V SLV  P  NG+  RL  P+    P +   +GR 
Sbjct: 4291 RGRQPRGAKKVGGFPLNSVTAAPPGVDSLVVQPGDNGVQTRLRKPV--TAPVTRGRKGRP 4348

Query: 893  P 895
            P
Sbjct: 4349 P 4349


>AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,
            isoform A protein.
          Length = 5560

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 731  RGXTPXGXXKYQGFP-----PEXPXVXSLVPXPAVNGIXVRL-SPLGKXGPFSNXPRGRX 892
            RG  P G  K  GFP        P V SLV  P  NG+  RL  P+    P +   +GR 
Sbjct: 4291 RGRQPRGAKKVGGFPLNSVTAAPPGVDSLVVQPGDNGVQTRLRKPV--TAPVTRGRKGRP 4348

Query: 893  P 895
            P
Sbjct: 4349 P 4349


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,376,898
Number of Sequences: 53049
Number of extensions: 329976
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6458274285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)