Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C10
         (1224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.57 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = +3

Query: 675 FXFXGXGGGG-GGFXGXXXXXNPXGXGVXXWGPFPXPXXXXXXPXXXGXG-XGFXXXXGG 848
           F   G  GGG GGF G      P   G   +G F             G G  GF    GG
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239

Query: 849 XXGXPXXXG 875
             G P   G
Sbjct: 240 FGGGPGGFG 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 1209 PPPXGXXPPPXXXXPPXGXXXXPPP 1135
            PPP    PPP     P G    PPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = -3

Query: 856 PXXPPXXXXNPXPXPXXXGXXXXXXGXGXGPXXXTPXPXGLXXXFXPXKPPPPP 695
           P  PP     P P P            G  P    P P G+     P  PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -3

Query: 1210 PPPX---GGXPPPXXXXPPXXXXXXPPPXP 1130
            PPP    GG PPP    PP      PPP P
Sbjct: 752  PPPAPIMGGPPPP--PPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 1210 PPPXGGXPPPXXXXPPXXXXXXPPPXP 1130
            P P  G PPP    P       PPP P
Sbjct: 754  PAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 2.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 736 LXXXFXPXKPPPPPP 692
           L   + P  PPPPPP
Sbjct: 183 LPSDYNPPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 2.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 718 PXKPPPPPPXP 686
           P   PPPPP P
Sbjct: 234 PLPAPPPPPPP 244


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 751 PXPXGLXXXFXPXKPPPPPPXPXKXK 674
           P P      F P   PPPPP P   K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,235
Number of Sequences: 5004
Number of extensions: 31861
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)