Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C08
         (1180 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.5  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   5.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   5.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   5.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 11  DHYRGILQIRFFXNLV 58
           D Y+GIL ++FF +LV
Sbjct: 247 DTYQGILVVQFFCSLV 262


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 102 LERWMSFFWN 73
           L++W SF+WN
Sbjct: 914 LDQWSSFYWN 923


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 102 LERWMSFFWN 73
           L++W SF+WN
Sbjct: 914 LDQWSSFYWN 923


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 815 GVSFVVPVLTLHVQPRRTP 759
           GVS +VP+  LH  P   P
Sbjct: 386 GVSIMVPISGLHYDPEYYP 404


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 213 LYNSKPDVRHHKGCLPEDRSSVWSLEMVPSEKLV 314
           LY+   D ++ K    E  +++W     P EKLV
Sbjct: 295 LYSPSSDSQYQKQLNVEHAANLWVKLGTPKEKLV 328


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 320 ISYTTDSFPGEYVPTVFDNYSAPMVVDGVAV 412
           IS   DSF   Y   V  NY  P V  GV +
Sbjct: 41  ISAILDSFSVSYDKRVRPNYGGPPVEVGVTM 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,454
Number of Sequences: 336
Number of extensions: 6012
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34434398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)