Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_C08
(1180 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 273 3e-74
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 211 2e-55
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 209 7e-55
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 195 9e-51
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 187 2e-48
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 168 1e-42
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 91 2e-19
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 91 3e-19
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 84 3e-17
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 77 4e-15
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 74 4e-14
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 73 6e-14
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 71 2e-13
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 71 4e-13
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 69 1e-12
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 62 2e-10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 61 3e-10
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 58 2e-09
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 45 2e-05
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 3.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 5.1
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 27 5.1
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 6.7
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 8.8
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 273 bits (670), Expect = 3e-74
Identities = 120/189 (63%), Positives = 149/189 (78%)
Frame = +2
Query: 269 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQED 448
IKCVVVGDG VGKTC+LISYTT+ FP +YVPTVFDNY+ +++ +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQED 63
Query: 449 YDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRDDR 628
YDRLRPLSYPQTDVFL+CFSVTSP+S+ENV KW+PE+ HHCP P ++VGT+IDLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDP 123
Query: 629 ETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLRPEPQK 808
L+ Q PL EQG++LA ++ AVKY+ECSALTQ+GLK VFDEA+ A L P
Sbjct: 124 SVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVPH 183
Query: 809 RHQRKCLIM 835
+ + KCL++
Sbjct: 184 KKKSKCLVL 192
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 211 bits (515), Expect = 2e-55
Identities = 98/193 (50%), Positives = 133/193 (68%), Gaps = 5/193 (2%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQEDY 451
K V+VGDG GKTC+LI ++ +FP YVPTVF+NY A + VDG + L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 452 DRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRDDRE 631
DRLRPLSYP + V LICFSV +P S +NV KW E+ H C + PI+LVG K+DLR+D +
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPK 127
Query: 632 TLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVL---RPE- 799
T+ LS+ P+ E+GQ +A KI A KY+ECSA G+ +VF+ A RA + +P
Sbjct: 128 TIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKPAS 187
Query: 800 -PQKRHQRKCLIM 835
P+ + ++ C+++
Sbjct: 188 VPKTKKKKHCILL 200
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 209 bits (510), Expect = 7e-55
Identities = 97/195 (49%), Positives = 130/195 (66%), Gaps = 7/195 (3%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQEDY 451
K V+VGDG GKTC+LI ++ +FP YVPTVF+NY A + VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 452 DRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRDDRE 631
DRLRPLSYP + V LICF+V SP S +NV KW E+ H C PI+LV K DLR+D +
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPK 127
Query: 632 TLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVL------- 790
+ LS+ P+ E+GQ +A KI A KY+ECSA T G+++VF+ A RA +
Sbjct: 128 IIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKPKV 187
Query: 791 RPEPQKRHQRKCLIM 835
+P + +++C+++
Sbjct: 188 KPSSGTKKKKRCILL 202
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 195 bits (476), Expect = 9e-51
Identities = 91/190 (47%), Positives = 126/190 (66%), Gaps = 2/190 (1%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVV--DGVAVSLGLWDTAGQE 445
K VVVGDG GKTC+LI +++ +FP YVPTVF+NY + + + L LWDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 446 DYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRDD 625
+YDRLRPLSYP ++V L+CFS+ P+S NVT KWYPE++H CP PI+LVG K DLR D
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKD 135
Query: 626 RETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLRPEPQ 805
R +L QG++P+ +Q Q +A + A Y+ECSA G+ +VF AV ++ +
Sbjct: 136 RNATEVLRTQGLTPVTYQQAQSVALSMNA-PYVECSAKENTGVNEVFQLAVGLTIK-KSF 193
Query: 806 KRHQRKCLIM 835
++ C+I+
Sbjct: 194 SFSKKSCVIL 203
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 187 bits (456), Expect = 2e-48
Identities = 94/199 (47%), Positives = 125/199 (62%), Gaps = 4/199 (2%)
Frame = +2
Query: 251 MSSGRPI--KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGL 424
M +PI K VVVGDG GKT +L +T FP EYVPTVF+NY + VDG +V L L
Sbjct: 1 MLQSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLAL 60
Query: 425 WDTAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGT 604
WDTAGQE+Y+RLRP+SY + + L+ F++ SP S ENV++KW EI CP+ P ILVG
Sbjct: 61 WDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGM 120
Query: 605 KIDLRDDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRA 784
K DLR D + + + + +K +Q + +A +I A KYMECS+LT G+ VF+ A RA
Sbjct: 121 KADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRA 180
Query: 785 VL--RPEPQKRHQRKCLIM 835
L R + KC I+
Sbjct: 181 ALTVRDSENDKSSTKCCII 199
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 168 bits (408), Expect = 1e-42
Identities = 84/186 (45%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Frame = +2
Query: 254 SSGRPI--KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLW 427
S +PI K V++GDG GKT +L +T FP Y PT+F+NY + VDG ++ L LW
Sbjct: 7 SKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLW 66
Query: 428 DTAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTK 607
DTAGQE+YD+LR LSY T V +ICF+V S S ENV +KW PE+ +CP ++LV K
Sbjct: 67 DTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALK 126
Query: 608 IDLRDDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAV 787
DLR E + E+G A KI AV+Y+ECSA RG+ + F EA R
Sbjct: 127 CDLRGADEE----QVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVA 182
Query: 788 LRPEPQ 805
L +P+
Sbjct: 183 LAAQPR 188
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 91.5 bits (217), Expect = 2e-19
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Frame = +2
Query: 269 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMV-VDGVAVSLGLWDTAGQE 445
IK +++GD VGK+C+L+ ++ DSF ++ T+ ++ + +DG + L +WDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 446 DYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPI-ILVGTKIDLRD 622
+ + Y L+ + VT S++NV + W+ ++ H + IL+G K D D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYKILIGNKCDCED 128
Query: 623 DRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAV 787
R+ + EQGQ LA+++ VK++E SA T + + F R +
Sbjct: 129 QRQ------------VSFEQGQALADEL-GVKFLEASAKTNVNVDEAFFTLAREI 170
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 91.1 bits (216), Expect = 3e-19
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 1/178 (0%)
Frame = +2
Query: 263 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQ 442
R K VVVGDG VGK+ + I F EY PT+ D+Y +DG L + DTAGQ
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQ 66
Query: 443 EDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDA-PIILVGTKIDLR 619
E+Y +R + FL+ +++TS SS++ +++ + ++ D P++LV K DL
Sbjct: 67 EEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLE 126
Query: 620 DDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLR 793
+R + R +G++LA + + Y+E SA + +++ F VR + R
Sbjct: 127 AER------------VVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVRTIRR 171
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 84.2 bits (199), Expect = 3e-17
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 2/170 (1%)
Frame = +2
Query: 263 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPMVVDGVAVSLGLWDTAG 439
R K V +G+ +VGKT ++ + D F Y T+ D S M ++ V L LWDTAG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 440 QEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIK-HHCPDAPIILVGTKIDL 616
QE + L P + V +I + +T+ +S+ N T KW +++ D I+LVG K DL
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDL 128
Query: 617 RDDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVF 766
D R+ + +E+G+K A +++ + +ME SA +K +F
Sbjct: 129 ADKRQ------------VTQEEGEKKAKELK-IMHMETSAKAGHNVKLLF 165
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 77.4 bits (182), Expect = 4e-15
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 5/185 (2%)
Frame = +2
Query: 269 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPMVVDGVAVSLGLWDTAGQE 445
+K V++GD VGKTC++ + F EY T+ D + +VVD V+L LWDTAGQE
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 446 DYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPD----APIILVGTKID 613
+ L Y D +I ++V + S+++V W E + P I+VG +ID
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVGNQID 127
Query: 614 LRDDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLR 793
+ +SL + + K + G + + E SA + +F+ R L
Sbjct: 128 KDASKRAVSL--HRALDYCKSKHGSNMI-------HFEASAKENTNVTDLFETVSRLALE 178
Query: 794 PEPQK 808
E +
Sbjct: 179 NESSR 183
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 73.7 bits (173), Expect = 4e-14
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPMVVDGVAVSLGLWDTAGQ 442
K V++GD VGK+ +++ + D F T+ F + P + + +V L +WDTAGQ
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLP-IDENTSVKLEIWDTAGQ 74
Query: 443 EDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPII-LVGTKIDLR 619
E Y L P+ Y + ++ + +T +S E S W E++ P+ +I L G K+DL
Sbjct: 75 ERYKSLAPMYYRNANCAIVVYDITQAASLEKAKS-WIKELQRQAPEGIVIALAGNKLDLA 133
Query: 620 DDRETL 637
+R +
Sbjct: 134 QERRAV 139
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 73.3 bits (172), Expect = 6e-14
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPMVVDGVAVSLGLWDTAGQED 448
K V+VGDG GKT + + T F +Y+ T+ + + + + +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 449 YDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRD 622
LR Y Q +I F VTS +Y+NV W+ ++ C + PI+L G K+D+++
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNV-PHWWRDLVRVCENIPIVLCGNKVDVKE 127
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 71.3 bits (167), Expect = 2e-13
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PMVVDGVAVSLGLWDTAGQED 448
K +++GD VGK+C+L+ + D++ Y+ T+ ++ ++G V L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 449 YDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPD-APIILVGTKIDLRDD 625
+ + Y +I + VT S+ NV +W EI + + +LVG K D+ D
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 626 R 628
+
Sbjct: 129 K 129
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 70.5 bits (165), Expect = 4e-13
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-MVVDGVAVSLGLWDTAGQED 448
K V++GD VGK+ +L+ +T + F E T+ ++ +V+D + +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 449 YDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHC-PDAPIILVGTKIDL 616
Y + Y LI + +T SS++NV +W E++ H + I+LVG K DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVGNKTDL 127
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 68.9 bits (161), Expect = 1e-12
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Frame = +2
Query: 269 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPMVVDGVAVSLGLWDTAGQE 445
+K +++G+ VGKT ++ Y F +Y T+ D + ++VD V+L LWDTAGQE
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 446 DYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHC----PDA-PIILVGTKI 610
+ L Y D ++ + V + S+E + S W E P+ P IL+G K+
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDS-WRDEFLIQASPSNPETFPFILLGNKV 127
Query: 611 DLRDDRETLS 640
D+ + + +S
Sbjct: 128 DVEEQKRMVS 137
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 61.7 bits (143), Expect = 2e-10
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Frame = +2
Query: 269 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMV-VDGVAVSLGLWDTAGQE 445
IK ++GD ++GKT ++++Y SF E T+ N+ + + ++ +WD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 446 DYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKID 613
++ + P+ L F ++ S+ ++ +WY + + A IL+GTK D
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSI-KEWYRQARGFNKTAVPILIGTKYD 125
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 60.9 bits (141), Expect = 3e-10
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Frame = +2
Query: 272 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQEDY 451
+ V+G +VGK+ + + Y + F Y PT+ + +S + G + + DTAGQ++Y
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 452 DRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPD-APIILVGTKIDLRDDR 628
L +++ +S+TS SS+E V + H + PI++VG K DL R
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQR 127
Query: 629 ETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFD 769
+ E+G+ LAN+ + + E SA + + F+
Sbjct: 128 AVTA------------EEGKALANEWKCA-WTEASARHNENVARAFE 161
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 58.0 bits (134), Expect = 2e-09
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Frame = +2
Query: 269 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVA-----VSLGLWDT 433
+K V+ G GK+C+L + + + + TV ++++ ++ G+ + L +WDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 434 AGQEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDA-PIILVGTKI 610
AGQE + + Y ++ + VT+ S+E ++S W +I+ P ++L G+K
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSS-WLSDIRAMAPSTICVVLAGSKS 128
Query: 611 DLRDDRE 631
DL++ R+
Sbjct: 129 DLQNQRQ 135
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 44.8 bits (101), Expect = 2e-05
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Frame = +2
Query: 263 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVA-VSLGLWDTAG 439
+ ++ V+ GD VGK+ LIS +P VF S P D VSL L DT
Sbjct: 2 KEVRVVICGDQGVGKSS-LISALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDT-- 58
Query: 440 QEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLR 619
Q D + L+ +IC + SYE V+ W P + + PI+L K +
Sbjct: 59 QSDSNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDL 118
Query: 620 DDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLRP 796
D+ + L + E M PL E +I A + CSAL + + ++F V+ P
Sbjct: 119 DNYQGLHTI-EHEMIPLINE-----FKEIEAC--ILCSALEKINVNELFYMCRACVIYP 169
Score = 32.3 bits (70), Expect = 0.13
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Frame = +2
Query: 275 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQEDYD 454
C VVG + GKT +L S+ ++ TV ++ + +S G+ D D
Sbjct: 424 CFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEFQSTQRYLVLS-----EIGETDLD 478
Query: 455 RL-RPLSYPQTDVFLICFSVTSPSSYENVTS--KWYPEIKHHCPDAPIILVGTKIDL 616
L P S D+ + + ++P+S+ + + YP+++ P + TK DL
Sbjct: 479 ILAEPKSLEACDILCLLYDSSNPNSFSFIANLLNLYPDLQ----KIPCVFAATKADL 531
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 810 LFCGSGLNTARTASSNTCLRPLCVSAEHSIYFTARILLASFC 685
++ G + R+ T ++ C+S S FT++ LLASFC
Sbjct: 296 IYTGGNDGSVRSWDYKTRIQESCISV--SSLFTSKTLLASFC 335
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 275 CVVVGDGTVGKTCML 319
C++VGD GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 5.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -2
Query: 915 KHIITVVERFLQILIRFFSHGFCLHFYII 829
K+ V+++ + L R ++H +C HF+++
Sbjct: 140 KNFRKVIQQIFRRLFRIYAHIYCSHFHVM 168
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 6.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -2
Query: 411 TATPSTTIGAE*LSKTVGTYSPGKLSVVYEI------NIQVFPTVPSPTTTHLIGLPEDI 250
TA P +G + KT+G S GK+ +V I +++ P P+ T+ + + +
Sbjct: 43 TAGPGRQVGNWIIKKTIGAGSMGKVKLVVNILTGEKAALKMIPFTPN-NTSQTVRVQREA 101
Query: 249 LYGALRQVLNYINYILFVR 193
L G L + N I +R
Sbjct: 102 LLGRLLRHPNICRVIDCIR 120
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 300 TVPSPTTTHLIGLPEDILYGALRQVLNYINYILFVRFNHN 181
T P+ T ++ LPE+I LR + IL+ + N+N
Sbjct: 171 TDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNN 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,405,111
Number of Sequences: 5004
Number of extensions: 95440
Number of successful extensions: 296
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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