Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C07
         (1185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    29   1.7  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   5.1  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   6.7  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 749 LGIPL*LHTLPNTCLXSKQTVSSGXEVSDVLQHLNKTD 636
           LG+P      PN C+ S   V  G   +D+L H ++ +
Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 446 PGLNLRTLSTFGHHRNRLCMVKLTGY 369
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +2

Query: 464 HLLDEESIAKAVRYSNVVINLLGXDYETXNFKYNDVHVDGVRRIARICREEGVERFIHLS 643
           H L   S AK+     +  +  G D  + N K  +VH++ V +IA     EG+ R     
Sbjct: 58  HRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDPEGL-RVCFWD 116

Query: 644 YLNAEEHPKPLVLK 685
            +N ++ P  L+L+
Sbjct: 117 AVNCDD-PDGLLLR 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,019,268
Number of Sequences: 5004
Number of extensions: 73191
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)