Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_C07
(1185 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 120 2e-27
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 33 0.33
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 33 0.33
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 33 0.33
01_01_0044 - 326337-326500,326618-327398 32 1.0
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 31 1.8
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 30 3.1
01_01_0043 - 321810-321973,322054-322846 30 4.1
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 29 5.4
05_02_0131 - 6919143-6920125,6920334-6920529 29 5.4
05_02_0128 - 6890918-6891900,6892929-6893124 29 5.4
11_06_0754 - 26935647-26937780,26940890-26941827 29 7.1
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 9.4
>02_05_1223 + 35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 120 bits (290), Expect = 2e-27
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
Frame = +2
Query: 365 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLLGXDYE 544
+G+Q+++P+RG + LK+ GDLGQ++ Y+ D +SI + SNVVINL+G +YE
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60
Query: 545 TXNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNAEEHPKPLVLKKPSAWXISKYXG 721
T N+ +++V+ ++A I +E G+ RFI +S L A PS +K G
Sbjct: 61 TRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGAS-------ASSPSRMLRAKAAG 113
Query: 722 ECAVREEYPTATIIRASDIYGSEDRFSRSLVNKMRSHSXLMPLYKNGLXTVKQPVFVSDV 901
E +V +E+P ATI+R + + G+EDR ++ L PL +G T QPV+V DV
Sbjct: 114 EESVLKEFPEATIMRPATMIGTEDRILNRWAQFAKNWGFL-PLVDSG-STKIQPVYVVDV 171
Query: 902 AQGIVNAXRDXDTKC-EVYXAVGPKXYLLADXVD 1000
A IVN+ +D T + Y GP+ Y + + +
Sbjct: 172 AAAIVNSLKDDGTSMGKTYELGGPEIYTVHELAE 205
>02_05_1108 - 34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 33.5 bits (73), Expect = 0.33
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 878 QPVFVSDVAQGIVNAXRDXDTKC-EVYXAVGPKXYLLADXVD 1000
QPV+V DVA IVN+ +D T + Y GP+ Y + D +
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAE 363
>02_05_1103 - 34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 33.5 bits (73), Expect = 0.33
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 878 QPVFVSDVAQGIVNAXRDXDTKC-EVYXAVGPKXYLLADXVD 1000
QPV+V DVA IVN+ +D T + Y GP+ Y + D +
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAE 363
>02_05_1100 - 34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 33.5 bits (73), Expect = 0.33
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 878 QPVFVSDVAQGIVNAXRDXDTKC-EVYXAVGPKXYLLADXVD 1000
QPV+V DVA IVN+ +D T + Y GP+ Y + D +
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAE 363
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.9 bits (69), Expect = 1.0
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 311 VFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDLGQVLFTPYHLLDE 478
V G TG++GR+V ++G T L+ D +Q L+ D G L L D
Sbjct: 14 VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDAGVTLLHG-DLYDH 72
Query: 479 ESIAKAVRYSNVVINLLG 532
S+ AVR ++VVI+ LG
Sbjct: 73 ASLLSAVRDADVVISTLG 90
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +2
Query: 704 ISKYXGECAVREEYPTATIIRASDIYGSEDRFSRSLVNKMRSHSXLMPLYKNGLXTVKQP 883
IS + E + + + A+D + S +NK + H+ + PLYK ++ P
Sbjct: 840 ISSHQEEHGISDSSYASLATSAADAFHVMMSDSEVCLNK-KFHARIKPLYKQRFFSILMP 898
Query: 884 VFVSDVAQGIVNAXRDXDTKCEVYXAVG 967
+F+S + + V TK +Y A G
Sbjct: 899 IFLSKIKESTV-----MTTKLVLYRAFG 921
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 476 EESIAKAVRYSNVVINLLGXDYETXNF----KYNDVHVDGVRRIARICREEGVERFIHLS 643
+E + KA+R + V +L + ++V+++G + C E GV R +++S
Sbjct: 98 KEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVS 157
Query: 644 YLNAEEHPKPLV 679
N +P+V
Sbjct: 158 TYNVVFGGEPIV 169
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 311 VFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDLGQVLFTPYHLLDE 478
V G TG++GR+V ++G T L+ D AQ L D G L L D
Sbjct: 16 VVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDAGVTLLHG-DLHDH 74
Query: 479 ESIAKAVRYSNVVIN 523
S+ +AVR ++VVI+
Sbjct: 75 ASLLRAVRDADVVIS 89
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 29.5 bits (63), Expect = 5.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 278 GRXSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 439
GR VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 590 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 694
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 590 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 694
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 614 EGVERFIHLSYLNAEEHPKPLVL 682
EG+++ + LSY N EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.7 bits (61), Expect = 9.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 302 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 472
+A V G +G VC +L G +IL R + ++ +C +L ++F +L
Sbjct: 90 LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149
Query: 473 DEESIAKAVRYSN 511
D S A RY N
Sbjct: 150 DGNSRASLARYIN 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,941,425
Number of Sequences: 37544
Number of extensions: 462197
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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