Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C07
         (1185 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.56 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   2.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   2.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   2.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 467 LLDEESIAKAVRYSNVVINLLGXDYETXNFKY-NDVHVDGVRRIARICREEGVERFI 634
           L+ +  +AK   Y N+V+ LL          + +D  V GV R  + C   G   +I
Sbjct: 317 LVKDSGVAKDAAYDNIVLKLLTKPRARGCIIFGSDQEVAGVMRAVKRCNATGAFSWI 373


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 539 YETXNFKYNDVHVDGVRRI 595
           + T +++ ND+H +GV+ I
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 539 YETXNFKYNDVHVDGVRRI 595
           + T +++ ND+H +GV+ I
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 539 YETXNFKYNDVHVDGVRRI 595
           + T +++ ND+H +GV+ I
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,409
Number of Sequences: 438
Number of extensions: 4914
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40367835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)